Evidence map›Paper›PMID 32816149›Full record

ArticleJournal of molecular modeling2020

Exploring conformational changes of PPAR-Ɣ complexed with novel kaempferol, quercetin, and resveratrol derivatives to understand binding mode assessment: a small-molecule checkmate to cancer therapy.

Kiran Bharat Lokhande, Sangeeta Ballav, Nachiket Thosar, K Venkateswara Swamy, Soumya Basu

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of molecular modeling, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Kiran Bharat LokhandeBioinformatics Research Laboratory, Dr. D.Y. Patil Biotechnology, and Bioinformatics Institute, Dr. D.Y. Patil Vidyapeeth, Tathawade, Pune, 411 033, India.
Sangeeta BallavCancer and Translational Research Laboratory, Dr. D.Y. Patil Biotechnology and Bioinformatics Institute, Dr. D.Y. Patil Vidyapeeth, Tathawade, Pune, 411 033, India.
Nachiket ThosarCancer and Translational Research Laboratory, Dr. D.Y. Patil Biotechnology and Bioinformatics Institute, Dr. D.Y. Patil Vidyapeeth, Tathawade, Pune, 411 033, India.
K Venkateswara SwamyBioinformatics Research Laboratory, Dr. D.Y. Patil Biotechnology, and Bioinformatics Institute, Dr. D.Y. Patil Vidyapeeth, Tathawade, Pune, 411 033, India.
Soumya BasuCancer and Translational Research Laboratory, Dr. D.Y. Patil Biotechnology and Bioinformatics Institute, Dr. D.Y. Patil Vidyapeeth, Tathawade, Pune, 411 033, India. soumya.basu@dpu.edu.in.ORCID http://orcid.org/0000-0002-1726-0154
Dr. D.Y. Patil Vidyapeeth, Pune · IN

Funding

Indian Council of Medical Research Project ID: 2019-3458; File No.: ISRM/11(54)/2019Science and Engineering Research Board File Number: ECR/2016/000943
6 · The paper itself

Abstract

Peroxisome proliferator-activated receptors-γ (PPAR-γ), a ligand-activated transcription factor, activated by several ligands like fatty acids (linoleic acid being the most common) or their metabolites, can function as potential therapeutic target for various cancers. Although various synthetic ligands, thiazolidinediones (TZDs), serves as full agonist for PPAR-γ, application of these molecules has been discontinued due to adverse toxicity profile. Hence, with a dire need to identify novel PPAR-γ-agonists, the present in silico study aimed to determine the effectiveness of potent flavonoids, kaempferol (CID: 5280863), quercetin (CID: 5280343), and stilbenoid resveratrol (CID: 445154) and their 806 derivatives towards PPAR-γ that could combat the deleterious effect of TZDs. The molecular docking experiment performed by FlexX elucidated the efficacy of derivatives; Kem204, Qur8, and Res183 of kaempferol, quercetin, and resveratrol respectively to be more effective against PPAR-γ as compared with other derivatives. The physicochemical and pharmacokinetic parameters of Kem204, Qur8, and Res183 follow the drug-likeness and thus comprise a pharmacologically active model to be considered for advancing further potential hits. Further molecular dynamics (MD) simulation study revealed the Qur8 compound to have favorable dynamic interactions within the PPAR-γ which certainly paves away in developing futuristic potential anticancer drugs. Graphical abstract.

Indexed as

Molecular Docking SimulationMolecular Dynamics SimulationAntineoplastic AgentsBinding SitesHumansKaempferolsLigandsPPAR gammaProtein BindingQuercetinResveratrolAntineoplastic AgentskaempferolKaempferolsLigandsPPAR gammaQuercetinResveratrolCancerMolecular dockingMolecular dynamic simulationPeroxisome proliferator–activated receptor (PPAR-γ)

Identifiers

PMID32816149
OpenAlexW3053034804

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.