Evidence map›Paper›PMID 32815201›Full record

ArticleJournal of computational chemistry2020

Comprehensive 3D-RISM analysis of the hydration of small molecule binding sites in ligand-free protein structures.

Takashi Yoshidome, Mitsunori Ikeguchi, Masateru Ohta

Abstract read
In one paragraph

Article in Journal of computational chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Takashi YoshidomeDepartment of Applied Physics, Graduate School of Engineering, Tohoku University, Sendai, Japan.ORCID 0000-0001-7407-1942
Mitsunori IkeguchiDrug Development Data Intelligence Platform Group, Medical Science Innovation Hub Program, Cluster of Science, Technology and Innovation Hub, RIKEN, Yokohama, Japan.ORCID 0000-0003-3199-6931
Masateru OhtaDrug Development Data Intelligence Platform Group, Medical Science Innovation Hub Program, Cluster of Science, Technology and Innovation Hub, RIKEN, Yokohama, Japan.ORCID 0000-0002-6580-7185

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hydration is a critical factor in the ligand binding process. Herein, to examine the hydration states of ligand binding sites, the three-dimensional distribution function for the water oxygen site, g

Indexed as

Amino Acid SequenceBinding SitesCrystallizationHydrogen BondingHydrophobic and Hydrophilic InteractionsLigandsMolecular Dynamics SimulationProtein BindingProtein ConformationProteinsSolventsThermodynamicsWaterLigandsProteinsSolventsWaterdistribution functions of waterhydration statehydrogen bondsligand bindingstatistical mechanical theory of solvation

Identifiers

PMID32815201
PMCPMC7540010

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.