Evidence map›Paper›PMID 32814772›Full record

ArticleNature communications2020

Structure of an antagonist-bound ghrelin receptor reveals possible ghrelin recognition mode.

Yuki Shiimura, Shoichiro Horita, Akie Hamamoto, Hidetsugu Asada, Kunio Hirata, Misuzu Tanaka, Kenji Mori, Tomoko Uemura, Takuya Kobayashi, So Iwata and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 89 citations in OpenAlex.

  1. Article
  2. Beyond Hunger: The Structure, Signaling, and Systemic Roles of Ghrelin.International journal of molecular sciences · 2025
    Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. An atomic look at the interface of GHSR and its partners.Computational and structural biotechnology journal · 2024
    Article
  9. Review
  10. Article
  11. G Protein-Coupled Receptor-Ligand Pose and Functional Class Prediction.International journal of molecular sciences · 2024
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Ghrelin receptor signaling in health and disease: a biased view.Trends in endocrinology and metabolism: TEM · 2023
    Review
  17. Allosteric crosstalk in modular proteins: Function fine-tuning and drug design.Computational and structural biotechnology journal · 2023
    Review
  18. Article
  19. Article
  20. Binding Domain Characterization of Growth Hormone Secretagogue Receptor.Journal of translational internal medicine · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Yuki ShiimuraDivision of Molecular Genetics, Institute of Life Science, Kurume University, Fukuoka, Japan.
Shoichiro HoritaDepartment of Cell Biology, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Akie HamamotoDivision of Molecular Genetics, Institute of Life Science, Kurume University, Fukuoka, Japan.
Hidetsugu AsadaDepartment of Cell Biology, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Kunio HirataRIKEN, SPring-8 Center, Hyogo, Japan.ORCID http://orcid.org/0000-0002-1491-6509
Misuzu TanakaDivision of Molecular Genetics, Institute of Life Science, Kurume University, Fukuoka, Japan.
Kenji MoriDepartment of Biochemistry, National Cerebral and Cardiovascular Center Research Institute, Suita, Osaka, Japan.
Tomoko UemuraDepartment of Cell Biology, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Takuya KobayashiDepartment of Cell Biology, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
So IwataDepartment of Cell Biology, Graduate School of Medicine, Kyoto University, Kyoto, Japan. s.iwata@mfour.med.kyoto-u.ac.jp.ORCID http://orcid.org/0000-0003-1735-2937
Masayasu KojimaDivision of Molecular Genetics, Institute of Life Science, Kurume University, Fukuoka, Japan. kojima_masayasu@kurume-u.ac.jp.ORCID http://orcid.org/0000-0002-3153-0341
Kyoto University · JPKurume University · JPJapan Science and Technology Agency · JPNational Cerebral and Cardiovascular Center · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ghrelin is a gastric peptide hormone with important physiological functions. The unique feature of ghrelin is its Serine 3 acyl-modification, which is essential for ghrelin's activity. However, it remains to be elucidated why the acyl-modification of ghrelin is necessary for activity. To address these questions, we solved the crystal structure of the ghrelin receptor bound to antagonist. The ligand-binding pocket of the ghrelin receptor is bifurcated by a salt bridge between E124 and R283. A striking feature of the ligand-binding pocket of the ghrelin receptor is a wide gap (crevasse) between the TM6 and TM7 bundles that is rich in hydrophobic amino acids, including a cluster of phenylalanine residues. Mutagenesis analyses suggest that the interaction between the gap structure and the acyl acid moiety of ghrelin may participate in transforming the ghrelin receptor into an active conformation.

Indexed as

AnimalsBinding SitesCHO CellsCricetinaeCricetulusCrystallography, X-RayGhrelinHEK293 CellsHumansLigandsMice, Inbred MRL lprMutagenesis, Site-DirectedPhenylalanineProtein BindingProtein ConformationReceptors, GhrelinGhrelinLigandsPhenylalanineReceptors, Ghrelin

Identifiers

PMID32814772
PMCPMC7438500
OpenAlexW3065797019

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.