Evidence map›Paper›PMID 32814028›Full record

ArticleImmunity2020

Paneth Cell-Derived Lysozyme Defines the Composition of Mucolytic Microbiota and the Inflammatory Tone of the Intestine.

Shiyan Yu, Iyshwarya Balasubramanian, Daniel Laubitz, Kevin Tong, Sheila Bandyopadhyay, Xiang Lin, Juan Flores, Rajbir Singh, Yue Liu, Carlos Macazana and 16 more

Open access · greenAbstract read
In one paragraph

Article in Immunity, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 141 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
141citing papers in PubMed, 1 pooled it
18.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

141 citing papers in PubMed, 1 synthesis or guideline pooled it, 228 citations in OpenAlex.

  1. Pooled it
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  5. Long Noncoding RNANon-coding RNA · 2026
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81 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

26 authors at 5 institutions in 2 countries.

Shiyan YuDepartment of Biological Sciences, Rutgers University, Newark, NJ, USA.
Iyshwarya BalasubramanianDepartment of Biological Sciences, Rutgers University, Newark, NJ, USA.
Daniel LaubitzDepartment of Pediatrics, University of Arizona, Tucson, AZ, USA.
Kevin TongDepartment of Genetics, Rutgers University, Piscataway, NJ, USA.
Sheila BandyopadhyayDepartment of Biological Sciences, Rutgers University, Newark, NJ, USA.
Xiang LinDepartment of Computer Science, New Jersey Institute of Technology, Newark, NJ, USA.
Juan FloresDepartment of Biological Sciences, Rutgers University, Newark, NJ, USA.
Rajbir SinghDepartment of Biological Sciences, Rutgers University, Newark, NJ, USA.
Yue LiuDepartment of Biological Sciences, Rutgers University, Newark, NJ, USA.
Carlos MacazanaDepartment of Biological Sciences, Rutgers University, Newark, NJ, USA.
Yanlin ZhaoCenter for Immunity and Inflammation, Rutgers New Jersey Medical School, Newark, NJ, USA.
Fabienne Béguet-CrespelMicalis Institute, Institut National de la Recherche Agronomique (INRA), AgroParisTech, Université Paris-Saclay, Jouy-en-Josas, France.
Karuna PatilDepartment of Pediatrics, University of Arizona, Tucson, AZ, USA.
Monica T Midura-KielaDepartment of Pediatrics, University of Arizona, Tucson, AZ, USA.
Daniel WangDepartment of Biological Sciences, Rutgers University, Newark, NJ, USA.
George S YapCenter for Immunity and Inflammation, Rutgers New Jersey Medical School, Newark, NJ, USA.
Ronaldo P FerrarisDepartment of Pharmacology, Physiology and Neuroscience, Rutgers New Jersey Medical School, Newark, NJ, USA.
Zhi WeiDepartment of Computer Science, New Jersey Institute of Technology, Newark, NJ, USA.
Edward M BonderDepartment of Biological Sciences, Rutgers University, Newark, NJ, USA.
Max M HäggblomDepartment of Biochemistry and Microbiology, Rutgers University, New Brunswick, NJ, USA.
Lanjing ZhangDepartment of Biological Sciences, Rutgers University, Newark, NJ, USA; Department of Pathology, Princeton Medical Center, Plainsboro, NJ, USA.
Veronique DouardMicalis Institute, Institut National de la Recherche Agronomique (INRA), AgroParisTech, Université Paris-Saclay, Jouy-en-Josas, France.
Michael P VerziDepartment of Genetics, Rutgers University, Piscataway, NJ, USA.
Ken CadwellDepartment of Microbiology and Kimmel Center for Biology and Medicine at the Skirball Institute, New York University School of Medicine, New York, NY, USA.
Pawel R KielaDepartment of Pediatrics, University of Arizona, Tucson, AZ, USA; Department of Immunobiology, University of Arizona, Tucson, AZ, USA.
Nan GaoDepartment of Biological Sciences, Rutgers University, Newark, NJ, USA; Rutgers Cancer Institute of New Jersey, New Brunswick, NJ, USA. Electronic address: ngao@newark.rutgers.edu.
Rutgers, The State University of New Jersey · USUniversity of Arizona · USAgroParisTech · FRNew Jersey Institute of Technology · USNew York University · US

Funding

Diabetes, Digestive, and Kidney Diseases Extramural ResearchR01DK093668 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI Ken Hashigiwa Cadwell · 2011 to 2026
$7.3M
The role of autophagy gene Atg16L1 in allogeneic hematopoietic stem cell transplantation - Resubmission - 1R01HL123340 · NHLBI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI CADWELL, KEN HASHIGIWA, VAN DEN BRINK, MARCEL R M · 2015 to 2022
$5.2M
Transcriptional Mechanisms of Tumor SuppressionR01CA190558 · NCI · RUTGERS, THE STATE UNIV OF N.J. · PI MICHAEL P. VERZI · 2015 to 2026
$3.6M
Induction of effector lymphocyte lethargy by helminth coinfectionR01AI134040 · NIAID · RBHS-NEW JERSEY MEDICAL SCHOOL · PI GAUSE, WILLIAM CLARK, YAP, GEORGE S. · 2017 to 2021
$2.9M
Research Supplements to Promote Diversity in Health-Related ResearchR01DK119198 · NIDDK · RUTGERS THE STATE UNIV OF NJ NEWARK · PI GAO, NAN, KIELA, PAWEL R · 2019 to 2023
$1.9M
Endosomal Control of Microbe-Host HomeostasisR01DK102934 · NIDDK · RUTGERS THE STATE UNIV OF NJ NEWARK · PI GAO, NAN · 2014 to 2018
$1.8M
Modulation of dendritic cell function in the pathogenesis of Inflammatory Bowel DiseasesR01DK109711 · NIDDK · UNIVERSITY OF ARIZONA · PI GHISHAN, FAYEZ KHALAF, KIELA, PAWEL R · 2016 to 2020
$1.7M
Mucosal modulation by LGG and R. gnavus specific tryptophan metabolitesR01AT010243 · NCCIH · RUTGERS THE STATE UNIV OF NJ NEWARK · PI FERRARIS, RONALDO PARAOAN, GAO, NAN · 2018 to 2021
$1.6M
Abrogating a survival pathway in early colon cancer cellsR21CA178599 · NCI · RUTGERS THE STATE UNIV OF NJ NEWARK · PI GAO, NAN · 2013 to 2014
$366k
Elucidating the Role of SMAD4 in Colorectal CancerK99CA245123 · NCI · RUTGERS, THE STATE UNIV OF N.J. · PI TONG, KEVIN · 2020 to 2021
$241k
Salmonella-host interaction is mediated by a novel Cdc42 effector and lipidationsF31DK121428 · NIDDK · RUTGERS THE STATE UNIV OF NJ NEWARK · PI BANDYOPADHYAY, SHEILA · 2019 to 2021
$131k
SMAD4 in Serrated TumorigenesisF32CA235829 · NCI · RUTGERS, THE STATE UNIV OF N.J. · PI TONG, KEVIN · 2019 to 2020
$89k
NCCIH NIH HHS R01 AT010243NCI NIH HHS F32 CA235829NCI NIH HHS K99 CA245123NCI NIH HHS R01 CA190558NCI NIH HHS R21 CA178599NHLBI NIH HHS R01 HL123340NIAID NIH HHS R01 AI134040NIDDK NIH HHS F31 DK121428NIDDK NIH HHS R01 DK093668NIDDK NIH HHS R01 DK102934NIDDK NIH HHS R01 DK109711NIDDK NIH HHS R01 DK119198
6 · The paper itself

Abstract

Paneth cells are the primary source of C-type lysozyme, a β-1,4-N-acetylmuramoylhydrolase that enzymatically processes bacterial cell walls. Paneth cells are normally present in human cecum and ascending colon, but are rarely found in descending colon and rectum; Paneth cell metaplasia in this region and aberrant lysozyme production are hallmarks of inflammatory bowel disease (IBD) pathology. Here, we examined the impact of aberrant lysozyme production in colonic inflammation. Targeted disruption of Paneth cell lysozyme (Lyz1) protected mice from experimental colitis. Lyz1-deficiency diminished intestinal immune responses to bacterial molecular patterns and resulted in the expansion of lysozyme-sensitive mucolytic bacteria, including Ruminococcus gnavus, a Crohn's disease-associated pathobiont. Ectopic lysozyme production in colonic epithelium suppressed lysozyme-sensitive bacteria and exacerbated colitis. Transfer of R. gnavus into Lyz1

Indexed as

AnimalsColitis, UlcerativeCrohn DiseaseEubacterialesFemaleGastrointestinal MicrobiomeGoblet CellsHumansMiceMice, Inbred BALB CMice, Inbred C57BLMice, KnockoutMuramidasePaneth CellsSTAT6 Transcription FactorMuramidaseStat6 protein, mouseSTAT6 Transcription FactorcolitisIL-13inflammationlysozymeLyz1mucolytic bacteriaPaneth cellRuminococcus gnavustype 2 immunity

Identifiers

PMID32814028
PMCPMC7461615
OpenAlexW3051806837

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.