Evidence map›Paper›PMID 32813972›Full record

ArticleBiochemistry2020

Quantifying the Relationship between Conformational Dynamics and Enzymatic Activity in Ribonuclease HI Homologues.

James A Martin, Paul Robustelli, Arthur G Palmer

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Dynamic regulation of Zn(II) sequestration by calgranulin C.Protein science : a publication of the Protein Society · 2022
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

James A MartinDepartment of Biological Sciences, Columbia University, New York, New York 10027, United States.
Paul RobustelliDepartment of Chemistry, Dartmouth College, Hanover, New Hampshire 03755, United States.ORCID 0000-0002-9282-8993
Arthur G PalmerDepartment of Biochemistry and Molecular Biophysics, Columbia University, New York, New York 10032, United States.ORCID 0000-0002-2770-0053
Columbia University · USDartmouth College · US

Funding

TR&D4: Integrated pipeline for data analysisP41GM118302 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI PALMER, ARTHUR G · 2017 to 2021
$8.5M
Macromolecular dynamics and conformational changes in biological functionR35GM130398 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ARTHUR G PALMER · 2019 to 2026
$4.6M
Upgrade of 800 MHz SpectrometerS10OD016432 · OD · NEW YORK STRUCTURAL BIOLOGY CENTER · PI PALMER, ARTHUR G · 2014 to 2014
$600k
Upgrade of 600 MHz NMR spectrometerS10RR026540 · NCRR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI PALMER, ARTHUR G · 2010 to 2010
$495k
NCRR NIH HHS S10 RR026540NIGMS NIH HHS P41 GM118302NIGMS NIH HHS R35 GM130398NIH HHS S10 OD016432
6 · The paper itself

Abstract

Ribonuclease HI (RNHI), a ubiquitous, non-sequence-specific endonuclease, cleaves the RNA strand in RNA/DNA hybrids. RNHI functions in replication and genome maintenance, and retroviral reverse transcriptases contain an essential ribonuclease H domain. Nuclear magnetic resonance (NMR) spectroscopy combined with molecular dynamics (MD) simulations suggests a model in which the extended handle region domain of

Indexed as

Amino Acid SequenceAmino Acid SubstitutionBinding SitesEnzyme ActivationEscherichia coliModels, MolecularMolecular Dynamics SimulationNuclear Magnetic Resonance, BiomolecularProtein ConformationQuantitative Structure-Activity RelationshipRibonuclease HSequence Homology, Amino AcidThermus thermophilusRibonuclease Hribonuclease HI

Identifiers

PMID32813972
PMCPMC7737441
OpenAlexW3063437788

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.