Evidence map›Paper›PMID 32813721›Full record

ArticlePloS one2020

Quantitative phosphoproteomic analysis provides insights into the aluminum-responsiveness of Tamba black soybean.

Rongrong Han, Yunmin Wei, Yonghong Xie, Lusheng Liu, Caode Jiang, Yongxiong Yu

Abstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Rongrong HanCollege of Animal Science and Technology, Southwest University, Beibei, Chongqing, China.
Yunmin WeiCollege of Animal Science and Technology, Southwest University, Beibei, Chongqing, China.
Yonghong XieCollege of Animal Science and Technology, Southwest University, Beibei, Chongqing, China.
Lusheng LiuCollege of Animal Science and Technology, Southwest University, Beibei, Chongqing, China.
Caode JiangCollege of Animal Science and Technology, Southwest University, Beibei, Chongqing, China.
Yongxiong YuCollege of Animal Science and Technology, Southwest University, Beibei, Chongqing, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Aluminum (Al3+) toxicity is one of the most important limitations to agricultural production worldwide. The overall response of plants to Al3+ stress has been documented, but the contribution of protein phosphorylation to Al3+ detoxicity and tolerance in plants is unclear. Using a combination of tandem mass tag (TMT) labeling, immobilized metal affinity chromatography (IMAC) enrichment and liquid chromatography-tandem mass spectrometry (LC-MS/MS), Al3+-induced phosphoproteomic changes in roots of Tamba black soybean (TBS) were investigated in this study. The Data collected in this study are available via ProteomeXchange with the identifier PXD019807. After the Al3+ treatment, 189 proteins harboring 278 phosphosites were significantly changed (fold change > 1.2 or < 0.83, p < 0.05), with 88 upregulated, 96 downregulated and 5 up-/downregulated. Enrichment and protein interaction analyses revealed that differentially phosphorylated proteins (DPPs) under the Al3+ treatment were mainly related to G-protein-mediated signaling, transcription and translation, transporters and carbohydrate metabolism. Particularly, DPPs associated with root growth inhibition or citric acid synthesis were identified. The results of this study provide novel insights into the molecular mechanisms of TBS post-translational modifications in response to Al3+ stress.

Indexed as

ProteomicsAluminumCitratesGlycine maxPhosphoproteinsPhosphorylationPlant ProteinsPlant RootsProtein BiosynthesisProtein Interaction MapsProtein Processing, Post-TranslationalSignal TransductionStress, PhysiologicalTranscription, GeneticAluminumCitratesPhosphoproteinsPlant Proteins

Identifiers

PMID32813721
PMCPMC7437914

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.