Evidence map›Paper›PMID 32813698›Full record

ArticlePLoS genetics2020

Paired Box 9 (PAX9), the RNA polymerase II transcription factor, regulates human ribosome biogenesis and craniofacial development.

Katherine I Farley-Barnes, Engin Deniz, Maya M Overton, Mustafa K Khokha, Susan J Baserga

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 17 citations in OpenAlex.

  1. Genetic architecture of craniofacial morphogenesis: roles ofFrontiers in cell and developmental biology · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. PAX9 in Cancer Development.International journal of molecular sciences · 2022
    Review
  7. Article
  8. Medicina (Kaunas, Lithuania) · 2021
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Katherine I Farley-BarnesDepartment of Molecular Biophysics & Biochemistry, Yale University School of Medicine, New Haven, Connecticut, United States of America.ORCID 0000-0002-5552-2434
Engin DenizPediatric Genomics Discovery Program, Department of Pediatrics, Yale University School of Medicine, New Haven, Connecticut, United States of America.
Maya M OvertonDepartment of Molecular Biophysics & Biochemistry, Yale University School of Medicine, New Haven, Connecticut, United States of America.ORCID 0000-0002-0440-776X
Mustafa K KhokhaPediatric Genomics Discovery Program, Department of Pediatrics, Yale University School of Medicine, New Haven, Connecticut, United States of America.ORCID 0000-0002-9846-7076
Susan J BasergaDepartment of Molecular Biophysics & Biochemistry, Yale University School of Medicine, New Haven, Connecticut, United States of America.ORCID 0000-0002-7731-8629
Yale University · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Skill Development for Diverse Scientific Careers: A New Course Predoctoral Program in Cellular and Molecular BiologyT32GM007223 · NIGMS · YALE UNIVERSITY · PI BASERGA, SUSAN J · 1985 to 2019
$31.0M
Novel regulatory networks driving human ribosome biogenesisR35GM131687 · NIGMS · YALE UNIVERSITY · PI Susan J Baserga · 2019 to 2026
$5.1M
A system approach to the analysis of Heterotaxy Candidate GenesR01HD102186 · NICHD · YALE UNIVERSITY · PI KHOKHA, MUSTAFA K · 2020 to 2024
$3.1M
A system approach to the analysis of Heterotaxy Candiate GenesR01HD081379 · NICHD · YALE UNIVERSITY · PI KHOKHA, MUSTAFA K · 2014 to 2018
$2.7M
Key factors in human ribosome biogenesisR01GM115710 · NIGMS · YALE UNIVERSITY · PI BASERGA, SUSAN J · 2015 to 2018
$1.6M
A New Role for the PAX9 Protein in Ribosome BiogenesisR01GM122926 · NIGMS · YALE UNIVERSITY · PI BASERGA, SUSAN J · 2017 to 2019
$663k
PAX9, ribosome biogenesis, and congenital diseaseF31DE026946 · NIDCR · YALE UNIVERSITY · PI FARLEY, KATHERINE IRENE · 2017 to 2019
$81k
NCATS NIH HHS UL1 TR001863NICHD NIH HHS R01 HD081379NICHD NIH HHS R01 HD102186NIDCR NIH HHS F31 DE026946NIGMS NIH HHS R01 GM115710NIGMS NIH HHS R01 GM122926NIGMS NIH HHS R35 GM131687NIGMS NIH HHS T32 GM007223
6 · The paper itself

Abstract

Dysregulation of ribosome production can lead to a number of developmental disorders called ribosomopathies. Despite the ubiquitous requirement for these cellular machines used in protein synthesis, ribosomopathies manifest in a tissue-specific manner, with many affecting the development of the face. Here we reveal yet another connection between craniofacial development and making ribosomes through the protein Paired Box 9 (PAX9). PAX9 functions as an RNA Polymerase II transcription factor to regulate the expression of proteins required for craniofacial and tooth development in humans. We now expand this function of PAX9 by demonstrating that PAX9 acts outside of the cell nucleolus to regulate the levels of proteins critical for building the small subunit of the ribosome. This function of PAX9 is conserved to the organism Xenopus tropicalis, an established model for human ribosomopathies. Depletion of pax9 leads to craniofacial defects due to abnormalities in neural crest development, a result consistent with that found for depletion of other ribosome biogenesis factors. This work highlights an unexpected layer of how the making of ribosomes is regulated in human cells and during embryonic development.

Indexed as

AnimalsCell NucleolusDevelopmental DisabilitiesEmbryonic DevelopmentGene Expression Regulation, DevelopmentalHumansNeural CrestPAX9 Transcription FactorProtein BiosynthesisRibosomesRNA Polymerase IIXenopusPAX9 Transcription FactorRNA Polymerase II

Identifiers

PMID32813698
PMCPMC7437866
OpenAlexW3066895970

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.