Evidence map›Paper›PMID 32813231›Full record

ArticlePlant molecular biology2020

The sugarcane ShMYB78 transcription factor activates suberin biosynthesis in Nicotiana benthamiana.

Raquel Figueiredo, Juan Pablo Portilla Llerena, Eduardo Kiyota, Sávio Siqueira Ferreira, Bárbara Rocha Cardeli, Sarah Caroline Ribeiro de Souza, Michael Dos Santos Brito, Ladaslav Sodek, Igor Cesarino, Paulo Mazzafera

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In one paragraph

Article in Plant molecular biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
10.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Visualization of Suberization and Lignification in Sugarcane.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  9. Review
  10. Article
  11. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Raquel FigueiredoDepartment of Plant Biology, Institute of Biology, State University of Campinas, Campinas, 13083-862, Brazil. raquelfigdo@gmail.com.ORCID http://orcid.org/0000-0003-1029-6709
Juan Pablo Portilla LlerenaDepartment of Plant Biology, Institute of Biology, State University of Campinas, Campinas, 13083-862, Brazil.
Eduardo KiyotaDepartment of Plant Biology, Institute of Biology, State University of Campinas, Campinas, 13083-862, Brazil.ORCID http://orcid.org/0000-0001-6322-3461
Sávio Siqueira FerreiraDepartment of Botany, Institute of Biosciences, University of São Paulo, São Paulo, 05508-090, Brazil.ORCID http://orcid.org/0000-0001-9926-9066
Bárbara Rocha CardeliDepartment of Plant Biology, Institute of Biology, State University of Campinas, Campinas, 13083-862, Brazil.
Sarah Caroline Ribeiro de SouzaDepartment of Plant Biology, Institute of Biology, State University of Campinas, Campinas, 13083-862, Brazil.ORCID http://orcid.org/0000-0001-9208-4501
Michael Dos Santos BritoInstitute of Science and Technology, Federal University of São Paulo, Campus São José dos Campos, São José dos Campos, 12231-280, Brazil.ORCID http://orcid.org/0000-0003-0990-5626
Ladaslav SodekDepartment of Plant Biology, Institute of Biology, State University of Campinas, Campinas, 13083-862, Brazil.ORCID http://orcid.org/0000-0003-2908-2954
Igor CesarinoDepartment of Botany, Institute of Biosciences, University of São Paulo, São Paulo, 05508-090, Brazil.ORCID http://orcid.org/0000-0002-6789-2432
Paulo MazzaferaDepartment of Plant Biology, Institute of Biology, State University of Campinas, Campinas, 13083-862, Brazil.ORCID http://orcid.org/0000-0001-9073-4056
Universidade Estadual de Campinas (UNICAMP) · BRUniversidade de São Paulo · BRUniversidade Federal de São Carlos · BRUniversidade Federal de São Paulo · BR

Funding

Conselho Nacional de Desenvolvimento Científico e Tecnológico 104051/2018-3Conselho Nacional de Desenvolvimento Científico e Tecnológico 302927/2018-2Fundação de Amparo à Pesquisa do Estado de São Paulo 2015/02527-1Fundação de Amparo à Pesquisa do Estado de São Paulo 2015/05437-3
6 · The paper itself

Abstract

key messageA sugarcane MYB present in the culm induces suberin biosynthesis and is involved both with fatty acid and phenolics metabolism. Few transcription factors have been described as regulators of cell wall polymers deposition in C4 grasses. Particularly, regulation of suberin biosynthesis in this group of plants remains poorly understood. Here, we showed that the sugarcane MYB transcription factor ShMYB78 is an activator of suberin biosynthesis and deposition. ShMYB78 was identified upon screening genes whose expression was upregulated in sugarcane internodes undergoing suberization during culm development or triggered by wounding. Agrobacterium-mediated transient expression of ShMYB78 in Nicotiana benthamiana leaves induced the ectopic deposition of suberin and its aliphatic and aromatic monomers. Further, the expression of suberin-related genes was induced by ShMYB78 heterologous expression in Nicotiana benthamiana leaves. ShMYB78 was shown to be a nuclear protein based on its presence in sugarcane internode nuclear protein extracts, and protoplast transactivation assays demonstrated that ShMYB78 activates the promoters of the sugarcane suberin biosynthetic genes β-ketoacyl-CoA synthase (ShKCS20) and caffeic acid-O-methyltransferase (ShCOMT). Our results suggest that ShMYB78 may be involved in the transcriptional regulation of suberin deposition, from fatty acid metabolism to phenylpropanoid biosynthesis, in sugarcane internodes.

Indexed as

Cell NucleusGene Expression Regulation, PlantLipidsNicotianaPhylogenyPlant LeavesPlant ProteinsPlants, Genetically ModifiedSaccharumTranscription FactorsLipidsPlant ProteinssuberinTranscription FactorsC4 grassesLipid metabolismMYB transcription factorPhenylpropanoid metabolismSuberinSugarcane

Identifiers

PMID32813231
OpenAlexW3071907991

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.