Evidence map›Paper›PMID 32811830›Full record

ArticleNature communications2020

A glycoprotein B-neutralizing antibody structure at 2.8 Å uncovers a critical domain for herpesvirus fusion initiation.

Stefan L Oliver, Yi Xing, Dong-Hua Chen, Soung Hun Roh, Grigore D Pintilie, David A Bushnell, Marvin H Sommer, Edward Yang, Andrea Carfi, Wah Chiu and 1 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 42 citations in OpenAlex.

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  11. Structure and Antigenicity of Kaposi's Sarcoma-Associated Herpesvirus Glycoprotein B.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  12. Review
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  14. Article
  15. Article
  16. Computational design of prefusion-stabilized Herpesvirus gB trimers.bioRxiv : the preprint server for biology · 2024
    Article
  17. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 2 countries.

Stefan L OliverDepartment of Pediatrics, Stanford University School of Medicine, Stanford, CA, 94305, USA. sloliver@stanford.edu.ORCID http://orcid.org/0000-0002-4614-7310
Yi XingGSK Vaccines, Cambridge, MA, 02139, USA.
Dong-Hua ChenStructural Biology, Stanford University School of Medicine, Stanford, CA, 94305, USA.ORCID http://orcid.org/0000-0002-5247-0106
Soung Hun RohDepartment of Biological Sciences, Institute of Molecular Biology & Genetics, Seoul National University, Seoul, 08826, Korea.
Grigore D PintilieBioengineering, Stanford University School of Medicine, Stanford, CA, 94305, USA.
David A BushnellStructural Biology, Stanford University School of Medicine, Stanford, CA, 94305, USA.ORCID http://orcid.org/0000-0001-8736-8403
Marvin H SommerDepartment of Pediatrics, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Edward YangDepartment of Pediatrics, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Andrea CarfiGSK Vaccines, Cambridge, MA, 02139, USA.
Wah ChiuBioengineering, Stanford University School of Medicine, Stanford, CA, 94305, USA.ORCID http://orcid.org/0000-0002-8910-3078
Ann M ArvinDepartment of Pediatrics, Stanford University School of Medicine, Stanford, CA, 94305, USA.ORCID http://orcid.org/0000-0001-5404-1498
Stanford University · USAVEO Oncology (United States) · USModerna Therapeutics (United States) · USSeoul National University · KRSLAC National Accelerator Laboratory · USStanford Medicine · US

Funding

3 D ELECTRON MICROSCOPY OF MACROMOLECULES (5P41RR002250-27)P41GM103832 · NIGMS · STANFORD UNIVERSITY · PI CHIU, WAH · 2012 to 2019
$15.1M
Unified Data Resource for Large Complexes Determined by Cryo-Electron MicroscopyR01GM079429 · NIGMS · STANFORD UNIVERSITY · PI CHIU, WAH · 2007 to 2021
$11.6M
Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
Varicella-Zoster Virus: T Cell/Skin Tropisms &ImmunityR01AI020459 · NIAID · STANFORD UNIVERSITY · PI OLIVER, STEFAN LYNE · 1985 to 2023
$6.4M
Acquisition of a 300 kV Electron Microscope for Structural BiologyS10OD021600 · OD · STANFORD UNIVERSITY · PI CHIU, WAH · 2016 to 2016
$2.0M
Varicella-Zoster Virus: T Cell/Skin Tropisms & ImmunityR37AI020459 · NIAID · STANFORD UNIVERSITY · PI ARVIN, ANN · 2016 to 2020
$2.0M
Varicella zoster virus: molecular controls of cell fusion-dependent pathogenesisR01AI102546 · NIAID · STANFORD UNIVERSITY · PI ARVIN, ANN · 2012 to 2016
$1.9M
NIAID NIH HHS R01 AI020459NIAID NIH HHS R01 AI102546NIAID NIH HHS R37 AI020459NIGMS NIH HHS P41 GM103311NIGMS NIH HHS P41 GM103832NIGMS NIH HHS R01 GM079429NIH HHS S10 OD021600
6 · The paper itself

Abstract

Members of the Herpesviridae, including the medically important alphaherpesvirus varicella-zoster virus (VZV), induce fusion of the virion envelope with cell membranes during entry, and between cells to form polykaryocytes in infected tissues. The conserved glycoproteins, gB, gH and gL, are the core functional proteins of the herpesvirus fusion complex. gB serves as the primary fusogen via its fusion loops, but functions for the remaining gB domains remain unexplained. As a pathway for biological discovery of domain function, our approach used structure-based analysis of the viral fusogen together with a neutralizing antibody. We report here a 2.8 Å cryogenic-electron microscopy structure of native gB recovered from VZV-infected cells, in complex with a human monoclonal antibody, 93k. This high-resolution structure guided targeted mutagenesis at the gB-93k interface, providing compelling evidence that a domain spatially distant from the gB fusion loops is critical for herpesvirus fusion, revealing a potential new target for antiviral therapies.

Indexed as

Virus InternalizationAntibodies, NeutralizingCryoelectron MicroscopyHerpesvirus 3, HumanHumansHydrophobic and Hydrophilic InteractionsModels, MolecularProtein Conformation, beta-StrandProtein DomainsViral Envelope ProteinsAntibodies, Neutralizingglycoprotein B, varicella-zoster virusViral Envelope Proteins

Identifiers

PMID32811830
PMCPMC7435202
OpenAlexW3067701309

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.