Evidence map›Paper›PMID 32811534›Full record

ArticleMalaria journal2020

Template copy number and the sensitivity of quantitative PCR for Plasmodium falciparum in asymptomatic individuals.

Trevor A Thompson, Mahamoudou B Touré, Daouda Sanogo, Jeffrey G Shaffer, Seydou O Doumbia, Donald J Krogstad

Open access · goldAbstract read
In one paragraph

Article in Malaria journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Trevor A ThompsonWest African International Center of Excellence for Malaria Research, Bamako, Mali. tthompso@tulane.edu.
Mahamoudou B TouréWest African International Center of Excellence for Malaria Research, Bamako, Mali.
Daouda SanogoWest African International Center of Excellence for Malaria Research, Bamako, Mali.
Jeffrey G ShafferWest African International Center of Excellence for Malaria Research, Bamako, Mali. jshaffer@tulane.edu.
Seydou O DoumbiaWest African International Center of Excellence for Malaria Research, Bamako, Mali.
Donald J KrogstadWest African International Center of Excellence for Malaria Research, Bamako, Mali. donkrogstad@gmail.com.ORCID http://orcid.org/0000-0002-7972-9667
Tulane University · USUniversité des Sciences, des Techniques et des Technologies de Bamako · ML

Funding

Sequencing and Genomics CoresU19AI089696 · NIAID · TULANE UNIVERSITY OF LOUISIANA · PI KROGSTAD, DONALD JOHN · 2010 to 2016
$10.6M
Multidisciplinary Implementation Research for malaria control and elimination in West AfricaU19AI129387 · NIAID · UNIV OF SCIENCES, TECH & TECH OF BAMAKO · PI SEYDOU DOUMBIA · 2017 to 2026
$8.2M
Fogarty Global Health Fellows Coordinating CenterR25TW009340 · FIC · UNIV OF NORTH CAROLINA CHAPEL HILL · PI CHI, BENJAMIN H. · 2012 to 2016
$6.9M
Training Program on Operational and Health Services Research for Malaria in MaliD43TW008652 · FIC · UNIV OF SCIENCES, TECH & TECH OF BAMAKO · PI SEYDOU DOUMBIA, Alexandre Delamou · 2010 to 2026
$3.1M
FIC NIH HHS D43 TW008652FIC NIH HHS NIH Research Training Grant R25 TW009340FIC NIH HHS R25 TW009340NIAID NIH HHS U19 AI089696NIAID NIH HHS U19 AI129387
6 · The paper itself

Abstract

backgroundThe identification of asymptomatic individuals with Plasmodium falciparum infection is difficult because they do not seek medical treatment and often have too few asexual parasites detectable using microscopy or rapid diagnostic tests (≤ 200 parasites per μl). Quantitative PCR (qPCR) may provide greater sensitivity and permits estimation of the initial template DNA concentration. This study examined the hypothesis that qPCR assays using templates with higher copy numbers may be more sensitive for P. falciparum than assays based on templates with lower copy numbers.

methodsTo test this hypothesis, ten qPCR assays for DNA sequences with template copy numbers from 1 to 160 were compared using parasite DNA standards (n = 2) and smear-positive filter paper blots from asymptomatic smear-positive subjects (n = 96).

resultsBased on the testing of P. falciparum parasite DNA standards and filter paper blots, cycle threshold values decreased as the concentrations of template DNA and template copy numbers increased (p < 0.001). Likewise, the analytical and clinical sensitivities of qPCR assays for P. falciparum DNA (based on DNA standards and filter paper blots, respectively) increased with template copy number. Despite the gains in clinical sensitivity from increased template copy numbers, qPCR assays failed to detect more than half of the filter paper blots with low parasite densities (≤ 200 asexual parasites per μl).

conclusionsThese results confirm the hypothesis that the sensitivity of qPCR for P. falciparum in the blood of individuals with asymptomatic infection increases with template copy number. However, because even the most sensitive qPCR assays (with template copy numbers from 32 to 160) detected fewer than 50% of infections with ≤ 200 asexual parasites per μl, the sensitivity of qPCR must be increased further to identify all smear-positive, asymptomatic individuals in order to interrupt transmission.

Indexed as

Asymptomatic InfectionsDNA Copy Number VariationsAdolescentChildChild, PreschoolDNA, ProtozoanHumansMalaria, FalciparumPlasmodium falciparumReal-Time Polymerase Chain ReactionDNA, ProtozoanAsymptomaticDiagnosticPlasmodium falciparumQuantitative PCR (qPCR)Template copy number

Identifiers

PMID32811534
PMCPMC7436962
OpenAlexW3063151860

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.