Evidence map›Paper›PMID 32811438›Full record

ArticleBMC plant biology2020

OsCAF2 contains two CRM domains and is necessary for chloroplast development in rice.

Lan Shen, Qiang Zhang, Zhongwei Wang, Hongling Wen, Guanglian Hu, Deyong Ren, Jiang Hu, Li Zhu, Zhenyu Gao, Guangheng Zhang and 3 more

Abstract read
In one paragraph

Article in BMC plant biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Biology · 2022
    Article
  8. Article
  9. Maize kernel development.Molecular breeding : new strategies in plant improvement · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Lan ShenState Key Laboratory of Rice Biology / China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, 310006, China.
Qiang ZhangState Key Laboratory of Rice Biology / China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, 310006, China.
Zhongwei WangBiotechnology Research Center, Chongqing Academy of Agricultural Sciences, Chongqing, 401329, China.
Hongling WenState Key Laboratory of Rice Biology / China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, 310006, China.
Guanglian HuState Key Laboratory of Rice Biology / China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, 310006, China.
Deyong RenState Key Laboratory of Rice Biology / China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, 310006, China.
Jiang HuState Key Laboratory of Rice Biology / China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, 310006, China.
Li ZhuState Key Laboratory of Rice Biology / China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, 310006, China.
Zhenyu GaoState Key Laboratory of Rice Biology / China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, 310006, China.
Guangheng ZhangState Key Laboratory of Rice Biology / China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, 310006, China.
Longbiao GuoState Key Laboratory of Rice Biology / China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, 310006, China.
Dali ZengState Key Laboratory of Rice Biology / China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, 310006, China.
Qian QianState Key Laboratory of Rice Biology / China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, 310006, China. qianqian188@hotmail.com.ORCID http://orcid.org/0000-0002-0349-4937

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundChloroplasts play an important role in plant growth and development. The chloroplast genome contains approximately twenty group II introns that are spliced due to proteins encoded by nuclear genes. CAF2 is one of these splicing factors that has been shown to splice group IIB introns in maize and Arabidopsis thaliana. However, the research of the OsCAF2 gene in rice is very little, and the effects of OsCAF2 genes on chloroplasts development are not well characterized.

resultsIn this study, oscaf2 mutants were obtained by editing the OsCAF2 gene in the Nipponbare variety of rice. Phenotypic analysis showed that mutations to OsCAF2 led to albino leaves at the seeding stage that eventually caused plant death, and oscaf2 mutant plants had fewer chloroplasts and damaged chloroplast structure. We speculated that OsCAF2 might participate in the splicing of group IIA and IIB introns, which differs from its orthologs in A. thaliana and maize. Through yeast two-hybrid experiments, we found that the C-terminal region of OsCAF2 interacted with OsCRS2 and formed an OsCAF2-OsCRS2 complex. In addition, the N-terminal region of OsCAF2 interacted with itself to form homodimers.

conclusionTaken together, this study improved our understanding of the OsCAF2 protein, and revealed additional information about the molecular mechanism of OsCAF2 in regulating of chloroplast development in rice.

Indexed as

ChloroplastsCRISPR-Cas SystemsGene Expression ProfilingIntronsMutationOrganelle BiogenesisOryzaPhenotypePlant ProteinsProtein DomainsRNA Splicing FactorsPlant ProteinsRNA Splicing FactorsChloroplast developmentCRM domainIntron splicingOsCAF2Rice

Identifiers

PMID32811438
PMCPMC7437035

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.