Evidence map›Paper›PMID 32810290›Full record

ArticleAllergy2021

Dominant atopy risk mutations identified by mouse forward genetic analysis.

Jeffrey A SoRelle, Zhe Chen, Jianhui Wang, Tao Yue, Jin Huk Choi, Kuan-Wen Wang, Xue Zhong, Sara Hildebrand, Jamie Russell, Lindsay Scott and 11 more

Open access · greenAbstract read
In one paragraph

Article in Allergy, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Whence and wherefore IgE?Immunological reviews · 2024
    Review
  6. Article
  7. Article
  8. Article
  9. B cell receptor ligation induces IgE plasma cell elimination.The Journal of experimental medicine · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 1 institution in 1 country.

Jeffrey A SoRelleCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Zhe ChenCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Jianhui WangCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Tao YueCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Jin Huk ChoiCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Kuan-Wen WangCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Xue ZhongCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Sara HildebrandCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Jamie RussellCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Lindsay ScottCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Darui XuCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Xiaowei ZhanCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Chun Hui BuCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Tao WangCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Mihwa ChoiCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Miao TangCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Sara LudwigCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Xiaoming ZhanCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Xiaohong LiCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Eva Marie Y MorescoCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Bruce BeutlerCenter for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID 0000-0002-3639-246X
Southwestern Medical Center · US

Funding

Systems Biology CoreU19AI100627 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI ULEVITCH, RICHARD J · 2012 to 2021
$49.1M
Automated Forward Genetic Analysis of Adaptive ImmunityR01AI125581 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI BRUCE A BEUTLER · 2016 to 2026
$19.5M
NIAID NIH HHS R01 AI125581NIAID NIH HHS U19 AI100627
6 · The paper itself

Abstract

backgroundAtopy, the overall tendency to become sensitized to an allergen, is heritable but seldom ascribed to mutations within specific genes. Atopic individuals develop abnormally elevated IgE responses to immunization with potential allergens. To gain insight into the genetic causes of atopy, we carried out a forward genetic screen for atopy in mice.

methodsWe screened mice carrying homozygous and heterozygous N-ethyl-N-nitrosourea (ENU)-induced germline mutations for aberrant antigen-specific IgE and IgG1 production in response to immunization with the model allergen papain. Candidate genes were validated by independent gene mutation.

resultsOf 31 candidate genes selected for investigation, the effects of mutations in 23 genes on papain-specific IgE or IgG1 were verified. Among the 20 verified genes influencing the IgE response, eight were necessary for the response, while 12 repressed IgE. Nine genes were not previously implicated in the IgE response. Fifteen genes encoded proteins contributing to IgE class switch recombination or B-cell receptor signaling. The precise roles of the five remaining genes (Flcn, Map1lc3b, Me2, Prkd2, and Scarb2) remain to be determined. Loss-of-function mutations in nine of the 12 genes limiting the IgE response were dominant or semi-dominant for the IgE phenotype but did not cause immunodeficiency in the heterozygous state. Using damaging allele frequencies for the corresponding human genes and in silico simulations (Monte Carlo) of undiscovered atopy mutations, we estimated the percentage of humans with heterozygous atopy risk mutations.

conclusionsUp to 37% of individuals may be heterozygous carriers for at least one dominant atopy risk mutation.

Indexed as

Hypersensitivity, ImmediateImmunoglobulin EAllergensAnimalsImmunoglobulin GMiceMutationAllergensImmunoglobulin EImmunoglobulin GallergyatopyIgEIgG1papain

Identifiers

PMID32810290
PMCPMC7889751
OpenAlexW3051070822

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.