Evidence map›Paper›PMID 32810226›Full record

ArticleNucleic acids research2020

Structural and mechanistic insights into the CRISPR inhibition of AcrIF7.

Iktae Kim, Jasung Koo, So Young An, Suji Hong, Donghyun Ka, Eun-Hee Kim, Euiyoung Bae, Jeong-Yong Suh

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
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  6. Unveil the Secret of the Bacteria and Phage Arms Race.International journal of molecular sciences · 2023
    Review
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  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Iktae KimDepartment of Agricultural Biotechnology, Seoul National University, Seoul 08826, Korea.
Jasung KooDepartment of Agricultural Biotechnology, Seoul National University, Seoul 08826, Korea.
So Young AnDepartment of Agricultural Biotechnology, Seoul National University, Seoul 08826, Korea.
Suji HongDepartment of Agricultural Biotechnology, Seoul National University, Seoul 08826, Korea.
Donghyun KaDepartment of Agricultural Biotechnology, Seoul National University, Seoul 08826, Korea.
Eun-Hee KimProtein Structure Research Team, Korea Basic Science Institute, Ochang 28119, Korea.
Euiyoung BaeDepartment of Agricultural Biotechnology, Seoul National University, Seoul 08826, Korea.
Jeong-Yong SuhDepartment of Agricultural Biotechnology, Seoul National University, Seoul 08826, Korea.
Seoul National University · KRKorea Basic Science Institute · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The CRISPR-Cas system provides adaptive immunity for bacteria and archaea to combat invading phages and plasmids. Phages evolved anti-CRISPR (Acr) proteins to neutralize the host CRISPR-Cas immune system as a counter-defense mechanism. AcrIF7 in Pseudomonas aeruginosa prophages strongly inhibits the type I-F CRISPR-Cas system. Here, we determined the solution structure of AcrIF7 and identified its target, Cas8f of the Csy complex. AcrIF7 adopts a novel β1β2α1α2β3 fold and interacts with the target DNA binding site of Cas8f. Notably, AcrIF7 competes with AcrIF2 for the same binding interface on Cas8f without common structural motifs. AcrIF7 binding to Cas8f is driven mainly by electrostatic interactions that require position-specific surface charges. Our findings suggest that Acrs of divergent origin may have acquired specificity to a common target through convergent evolution of their surface charge configurations.

Indexed as

CRISPR-Cas SystemsBacteriophagesBinding SitesCRISPR-Associated ProteinsMolecular Docking SimulationProtein BindingPseudomonas aeruginosaViral ProteinsCRISPR-Associated ProteinsViral Proteins

Identifiers

PMID32810226
PMCPMC7515697
OpenAlexW3061834708

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.