Evidence map›Paper›PMID 32807965›Full record

ArticleNature chemical biology2020

Targeting a helix-in-groove interaction between E1 and E2 blocks ubiquitin transfer.

Ann M Cathcart, Gregory H Bird, Thomas E Wales, Henry D Herce, Edward P Harvey, Zachary J Hauseman, Catherine E Newman, Utsarga Adhikary, Michelle S Prew, Tun Oo and 3 more

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Ubiquitin ligases: guardians of mammalian development.Nature reviews. Molecular cell biology · 2022
    Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Ann M CathcartDepartment of Pediatric Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0002-4207-1654
Gregory H BirdDepartment of Pediatric Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Thomas E WalesDepartment of Chemistry and Chemical Biology, Northeastern University, Boston, MA, USA.
Henry D HerceDepartment of Pediatric Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Edward P HarveyDepartment of Pediatric Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Zachary J HausemanDepartment of Pediatric Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Catherine E NewmanDepartment of Pediatric Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Utsarga AdhikaryDepartment of Pediatric Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Michelle S PrewDepartment of Pediatric Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Tun OoDepartment of Pediatric Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Susan LeeDepartment of Pediatric Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
John R EngenDepartment of Chemistry and Chemical Biology, Northeastern University, Boston, MA, USA.ORCID http://orcid.org/0000-0002-6918-9476
Loren D WalenskyDepartment of Pediatric Oncology, Dana-Farber Cancer Institute, Boston, MA, USA. Loren_Walensky@dfci.harvard.edu.ORCID http://orcid.org/0000-0002-0869-2334
Dana-Farber Cancer Institute · USNortheastern University · US

Funding

Medical Scientist Training ProgramT32GM007753 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALENSKY, LOREN DAVID · 1985 to 2021
$50.0M
MOLECULAR BIOPHYSICS TRAINING GRANTT32GM008313 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI MURTHY, VENKATESH N · 1989 to 2023
$14.6M
Dissecting and Targeting Deregulated Mitochondrial Apoptosis in Human CancerR35CA197583 · NCI · DANA-FARBER CANCER INST · PI Loren David Walensky · 2015 to 2026
$12.5M
Stapled Peptides for Protein Interaction Research and Therapeutic Targeting in Human CancerR50CA211399 · NCI · DANA-FARBER CANCER INST · PI Gregory Howard Bird · 2016 to 2026
$3.2M
Extending the applications of hydrogen exchange mass spectrometryR01GM101135 · NIGMS · NORTHEASTERN UNIVERSITY · PI ENGEN, JOHN R · 2012 to 2015
$1.2M
Structure-Function Analysis of a Novel Inhibitory Mechanism for Pro-Apoptotic BAKF31CA210590 · NCI · DANA-FARBER CANCER INST · PI HAUSEMAN, ZACHARY JOEL · 2016 to 2019
$173k
Dissecting the Mitochondrial Translocation Mechanism of Anti-Apoptotic BCL-wF31CA210592 · NCI · DANA-FARBER CANCER INST · PI HARVEY, EDWARD PAUL · 2016 to 2019
$154k
Dissecting and targetting HDMX-medicated chemoresistance in human cancerF30CA221087 · NCI · DANA-FARBER CANCER INST · PI CATHCART, ANN MORGAN · 2017 to 2018
$72k
NCI NIH HHS F30 CA221087NCI NIH HHS F31 CA210590NCI NIH HHS F31 CA210592NCI NIH HHS R35 CA197583NCI NIH HHS R50 CA211399NIGMS NIH HHS R01 GM101135NIGMS NIH HHS T32 GM007753NIGMS NIH HHS T32 GM008313
6 · The paper itself

Abstract

The ubiquitin-proteasome system (UPS) is a highly regulated protein disposal process critical to cell survival. Inhibiting the pathway induces proteotoxic stress and can be an effective cancer treatment. The therapeutic window observed upon proteasomal blockade has motivated multiple UPS-targeting strategies, including preventing ubiquitination altogether. E1 initiates the cascade by transferring ubiquitin to E2 enzymes. A small molecule that engages the E1 ATP-binding site and derivatizes ubiquitin disrupts enzymatic activity and kills cancer cells. However, binding-site mutations cause resistance, motivating alternative approaches to block this promising target. We identified an interaction between the E2 N-terminal alpha-1 helix and a pocket within the E1 ubiquitin-fold domain as a potentially druggable site. Stapled peptides modeled after the E2 alpha-1 helix bound to the E1 groove, induced a consequential conformational change and inhibited E1 ubiquitin thiotransfer, disrupting E2 ubiquitin charging and ubiquitination of cellular proteins. Thus, we provide a blueprint for a distinct E1-targeting strategy to treat cancer.

Indexed as

Adenosine TriphosphateAmino Acid SequenceBinding SitesCell Line, TumorDrug DesignDrug Resistance, NeoplasmHumansMolecular ConformationMolecular Docking SimulationPeptidesProteasome Endopeptidase ComplexProtein BindingStructure-Activity RelationshipUbiquitinUbiquitin-Activating EnzymesUbiquitinationAdenosine TriphosphatePeptidesProteasome Endopeptidase ComplexUBA1 protein, humanUBA7 protein, humanUbiquitinUbiquitin-Activating Enzymes

Identifiers

PMID32807965
PMCPMC7904387
OpenAlexW3049469146

What OpenQuestion holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.