Evidence map›Paper›PMID 32807789›Full record

ArticleNature communications2020

Identifying proteins bound to native mitotic ESC chromosomes reveals chromatin repressors are important for compaction.

Dounia Djeghloul, Bhavik Patel, Holger Kramer, Andrew Dimond, Chad Whilding, Karen Brown, Anne-Céline Kohler, Amelie Feytout, Nicolas Veland, James Elliott and 10 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Cell and developmental biology: grand challenges.Frontiers in cell and developmental biology · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Genome folding dynamics during the M-to-G1-phase transition.Current opinion in genetics & development · 2023
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Maintaining Transcriptional Specificity Through Mitosis.Annual review of genomics and human genetics · 2022
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 5 institutions in 1 country.

Dounia DjeghloulLymphocyte Development Group, MRC London Institute of Medical Sciences, Imperial College London, Hammersmith Hospital Campus, Du Cane Road, London, W12 0NN, UK.ORCID http://orcid.org/0000-0002-7914-9777
Bhavik PatelFlow Cytometry Facility, MRC London Institute of Medical Sciences, Imperial College London, Hammersmith Hospital Campus, Du Cane Road, London, W12 0NN, UK.
Holger KramerBiological Mass Spectrometry and Proteomics Facility, MRC London Institute of Medical Sciences, Imperial College London, Hammersmith Hospital Campus, Du Cane Road, London, W12 0NN, UK.ORCID http://orcid.org/0000-0002-6400-0945
Andrew DimondLymphocyte Development Group, MRC London Institute of Medical Sciences, Imperial College London, Hammersmith Hospital Campus, Du Cane Road, London, W12 0NN, UK.ORCID http://orcid.org/0000-0002-2996-2479
Chad WhildingMicroscopy Facility, MRC London Institute of Medical Sciences, Imperial College London, Hammersmith Hospital Campus, Du Cane Road, London, W12 0NN, UK.
Karen BrownLymphocyte Development Group, MRC London Institute of Medical Sciences, Imperial College London, Hammersmith Hospital Campus, Du Cane Road, London, W12 0NN, UK.
Anne-Céline KohlerLymphocyte Development Group, MRC London Institute of Medical Sciences, Imperial College London, Hammersmith Hospital Campus, Du Cane Road, London, W12 0NN, UK.
Amelie FeytoutLymphocyte Development Group, MRC London Institute of Medical Sciences, Imperial College London, Hammersmith Hospital Campus, Du Cane Road, London, W12 0NN, UK.
Nicolas VelandLymphocyte Development Group, MRC London Institute of Medical Sciences, Imperial College London, Hammersmith Hospital Campus, Du Cane Road, London, W12 0NN, UK.ORCID http://orcid.org/0000-0002-3096-7867
James ElliottFlow Cytometry Facility, MRC London Institute of Medical Sciences, Imperial College London, Hammersmith Hospital Campus, Du Cane Road, London, W12 0NN, UK.
Tanmay A M BharatSir William Dunn School of Pathology, University of Oxford, OX1 3RE, Oxford, UK.ORCID http://orcid.org/0000-0002-0168-0277
Abul K TarafderSir William Dunn School of Pathology, University of Oxford, OX1 3RE, Oxford, UK.
Jan LöweMRC Laboratory of Molecular Biology, Cambridge, CB2 0QH, UK.ORCID http://orcid.org/0000-0002-5218-6615
Bee L NgWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UK.ORCID http://orcid.org/0000-0002-8338-4390
Ya GuoLymphocyte Development Group, MRC London Institute of Medical Sciences, Imperial College London, Hammersmith Hospital Campus, Du Cane Road, London, W12 0NN, UK.
Jacky GuyThe Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh, EH9 3BH, UK.ORCID http://orcid.org/0000-0002-8440-5667
Miles K HuseyinDepartment of Biochemistry, University of Oxford, OX1 3QU, Oxford, UK.ORCID http://orcid.org/0000-0002-0258-2994
Robert J KloseDepartment of Biochemistry, University of Oxford, OX1 3QU, Oxford, UK.
Matthias MerkenschlagerLymphocyte Development Group, MRC London Institute of Medical Sciences, Imperial College London, Hammersmith Hospital Campus, Du Cane Road, London, W12 0NN, UK.ORCID http://orcid.org/0000-0003-2889-3288
Amanda G FisherLymphocyte Development Group, MRC London Institute of Medical Sciences, Imperial College London, Hammersmith Hospital Campus, Du Cane Road, London, W12 0NN, UK. amanda.fisher@lms.mrc.ac.uk.ORCID http://orcid.org/0000-0003-3010-3644
Hammersmith Hospital · GBUniversity of Oxford · GBMRC Laboratory of Molecular Biology · GBWellcome Centre for Cell Biology · GBWellcome Sanger Institute · GB

Funding

Medical Research Council MC_U105184326Medical Research Council MC_U120027516Wellcome Trust 109102/Z/15/ZWellcome Trust 202231/Z/16/ZWellcome Trust 209400/Z/17/Z
6 · The paper itself

Abstract

Epigenetic information is transmitted from mother to daughter cells through mitosis. Here, to identify factors that might play a role in conveying epigenetic memory through cell division, we report on the isolation of unfixed, native chromosomes from metaphase-arrested cells using flow cytometry and perform LC-MS/MS to identify chromosome-bound proteins. A quantitative proteomic comparison between metaphase-arrested cell lysates and chromosome-sorted samples reveals a cohort of proteins that were significantly enriched on mitotic ESC chromosomes. These include pluripotency-associated transcription factors, repressive chromatin-modifiers such as PRC2 and DNA methyl-transferases, and proteins governing chromosome architecture. Deletion of PRC2, Dnmt1/3a/3b or Mecp2 in ESCs leads to an increase in the size of individual mitotic chromosomes, consistent with de-condensation. Similar results were obtained by the experimental cleavage of cohesin. Thus, we identify chromosome-bound factors in pluripotent stem cells during mitosis and reveal that PRC2, DNA methylation and Mecp2 are required to maintain chromosome compaction.

Indexed as

AnimalsChromatinChromosomesDNA (Cytosine-5-)-Methyltransferase 1DNA (Cytosine-5-)-MethyltransferasesDNA MethylationDNA Methyltransferase 3ADNA Methyltransferase 3BEmbryonic Stem CellsFluorescent Antibody TechniqueMethyl-CpG-Binding Protein 2MiceProteomicsTranscription FactorsChromatinDNA (Cytosine-5-)-Methyltransferase 1DNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3ADNA Methyltransferase 3BDnmt1 protein, mouseMecp2 protein, mouseMethyl-CpG-Binding Protein 2Transcription Factors

Identifiers

PMID32807789
PMCPMC7431861
OpenAlexW3049372051

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.