Evidence map›Paper›PMID 32806901›Full record

ArticleAnalytical chemistry2020

Toward Comprehensive Per- and Polyfluoroalkyl Substances Annotation Using FluoroMatch Software and Intelligent High-Resolution Tandem Mass Spectrometry Acquisition.

Jeremy P Koelmel, Matthew K Paige, Juan J Aristizabal-Henao, Nicole M Robey, Sara L Nason, Paul J Stelben, Yang Li, Nicholas M Kroeger, Michael P Napolitano, Tina Savvaides and 9 more

Open access · greenAbstract read
In one paragraph

Article in Analytical chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
7.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 110 citations in OpenAlex.

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  15. Emerging contaminants: A One Health perspective.Innovation (Cambridge (Mass.)) · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 3 countries.

Jeremy P KoelmelSchool of Public Health, Yale University, New Haven, Connecticut 06520, United States.
Matthew K PaigeSchool of Public Health, Yale University, New Haven, Connecticut 06520, United States.
Juan J Aristizabal-HenaoCenter for Environmental and Human Toxicology & Department of Physiological Sciences, University of Florida, Gainesville, Florida 32611, United States.
Nicole M RobeyDepartment of Environmental Engineering Sciences, University of Florida, Gainesville, Florida 32611, United States.
Sara L NasonDepartments of Environmental Sciences and Analytical Chemistry, The Connecticut Agricultural Experiment Station, New Haven, Connecticut 06511, United States.ORCID 0000-0002-3866-6399
Paul J StelbenSchool of Public Health, Yale University, New Haven, Connecticut 06520, United States.
Yang LiDepartment of Pathology, Immunology and Laboratory Medicine, University of Florida, Gainesville, Florida 32611, United States.
Nicholas M KroegerDepartment of Pathology, Immunology and Laboratory Medicine, University of Florida, Gainesville, Florida 32611, United States.
Michael P NapolitanoIndependent Researcher and Consultant, Charleston, South Carolina 29412, United States.ORCID 0000-0003-2787-0586
Tina SavvaidesSchool of Public Health, Yale University, New Haven, Connecticut 06520, United States.
Vasilis VasiliouSchool of Public Health, Yale University, New Haven, Connecticut 06520, United States.
Pawel RostkowskiEnvironmental Chemistry Department, Norwegian Institute for Air Research, 2007 Kjeller, Norway.
Timothy J GarrettDepartment of Pathology, Immunology and Laboratory Medicine, University of Florida, Gainesville, Florida 32611, United States.ORCID 0000-0003-1623-009X
Elizabeth LinSchool of Public Health, Yale University, New Haven, Connecticut 06520, United States.
Chris DeiglSynQuest Laboratories, Alachua, Florida 32615, Unites States.
Karl JobstDepartment of Chemistry, Memorial University of Newfoundland, St. John's, Newfoundland A1C 5S7, Canada.
Timothy G TownsendDepartment of Environmental Engineering Sciences, University of Florida, Gainesville, Florida 32611, United States.ORCID 0000-0002-1222-0954
Krystal J Godri PollittSchool of Public Health, Yale University, New Haven, Connecticut 06520, United States.ORCID 0000-0001-7332-2228
John A BowdenCenter for Environmental and Human Toxicology & Department of Physiological Sciences, University of Florida, Gainesville, Florida 32611, United States.ORCID 0000-0003-3135-4015
University of Florida · USYale University · USConnecticut Agricultural Experiment Station · USMemorial University of Newfoundland · CANILU · NO

Funding

EPA R839620
6 · The paper itself

Abstract

Thousands of per- and polyfluoroalkyl substances (PFAS) exist in the environment and pose a potential health hazard. Suspect and nontarget screening with liquid chromatography (LC)-high-resolution tandem mass spectrometry (HRMS/MS) can be used for comprehensive characterization of PFAS. To date, no automated open source PFAS data analysis software exists to mine these extensive data sets. We introduce FluoroMatch, which automates file conversion, chromatographic peak picking, blank feature filtering, PFAS annotation based on precursor and fragment masses, and annotation ranking. The software library currently contains ∼7 000 PFAS fragmentation patterns based on rules derived from standards and literature, and the software automates a process for users to add additional compounds. The use of intelligent data-acquisition methods (iterative exclusion) nearly doubled the number of annotations. The software application is demonstrated by characterizing PFAS in landfill leachate as well as in leachate foam generated to concentrate the compounds for remediation purposes. FluoroMatch had wide coverage, returning 27 PFAS annotations for landfill leachate samples, explaining 71% of the all-ion fragmentation (CF

Indexed as

AlgorithmsChromatography, LiquidHydrocarbons, FluorinatedSmall Molecule LibrariesSoftwareTandem Mass SpectrometryWater Pollutants, ChemicalHydrocarbons, FluorinatedSmall Molecule LibrariesWater Pollutants, Chemical

Identifiers

PMID32806901
PMCPMC11802340
OpenAlexW3047961773

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.