Evidence map›Paper›PMID 32804932›Full record

ArticlePLoS computational biology2020

Real-time estimation of disease activity in emerging outbreaks using internet search information.

Emily L Aiken, Sarah F McGough, Maimuna S Majumder, Gal Wachtel, Andre T Nguyen, Cecile Viboud, Mauricio Santillana

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Emily L AikenSchool of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts, United States of America.ORCID 0000-0003-4374-3536
Sarah F McGoughHarvard T.H. Chan School of Public Health, Boston, Massachusetts, United States of America.ORCID 0000-0003-2448-6714
Maimuna S MajumderDepartment of Healthcare Policy, Harvard Medical School, Boston, Massachusetts, United States of America.
Gal WachtelComputational Health Informatics Program, Boston Children's Hospital, Boston, Massachusetts, United States of America.ORCID 0000-0001-9079-9407
Andre T NguyenBooz Allen Hamilton, Columbia, Maryland, United States of America.ORCID 0000-0001-7131-6879
Cecile ViboudFogarty International Center, National Institutes of Health, Bethesda, Maryland, United States of America.ORCID 0000-0003-3243-4711
Mauricio SantillanaSchool of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts, United States of America.ORCID 0000-0002-4206-418X
Harvard University · USBoston Children's Hospital · USBooz Allen Hamilton (United States) · USNational Institutes of Health · US

Funding

RESEARCH TRAINING IN PEDIATRIC EMERGENCY MEDICINET32HD040128 · NICHD · CHILDREN'S HOSPITAL BOSTON · PI Kenneth D. Mandl · 2001 to 2026
$5.0M
Development of an Open-Source and Data-Driven Modeling Platform to Monitor and Forecast Disease ActivityR01GM130668 · NIGMS · NORTHEASTERN UNIVERSITY · PI SANTILLANA, MAURICIO · 2018 to 2022
$1.9M
NICHD NIH HHS T32 HD040128NIGMS NIH HHS R01 GM130668
6 · The paper itself

Abstract

Understanding the behavior of emerging disease outbreaks in, or ahead of, real-time could help healthcare officials better design interventions to mitigate impacts on affected populations. Most healthcare-based disease surveillance systems, however, have significant inherent reporting delays due to data collection, aggregation, and distribution processes. Recent work has shown that machine learning methods leveraging a combination of traditionally collected epidemiological information and novel Internet-based data sources, such as disease-related Internet search activity, can produce meaningful "nowcasts" of disease incidence ahead of healthcare-based estimates, with most successful case studies focusing on endemic and seasonal diseases such as influenza and dengue. Here, we apply similar computational methods to emerging outbreaks in geographic regions where no historical presence of the disease of interest has been observed. By combining limited available historical epidemiological data available with disease-related Internet search activity, we retrospectively estimate disease activity in five recent outbreaks weeks ahead of traditional surveillance methods. We find that the proposed computational methods frequently provide useful real-time incidence estimates that can help fill temporal data gaps resulting from surveillance reporting delays. However, the proposed methods are limited by issues of sample bias and skew in search query volumes, perhaps as a result of media coverage.

Indexed as

InternetComputational BiologyData CollectionDisease OutbreaksEpidemiologic MethodsHumansMachine LearningPublic Health SurveillanceSearch Engine

Identifiers

PMID32804932
PMCPMC7451983
OpenAlexW3060508733

What OpenQuestion holds

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LicenceCC0
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.