Evidence map›Paper›PMID 32803511›Full record

ArticleWorld journal of microbiology & biotechnology2020

The development of an efficient RNAi system based on Agrobacterium-mediated transformation approach for studying functional genomics in medical fungus Wolfiporia cocos.

Naiyao Chen, Mengting Chen, Ting Wu, Yinbing Bian, Zhangyi Xu

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In one paragraph

Article in World journal of microbiology & biotechnology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Naiyao ChenInstitute of Applied Mycology, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China.
Mengting ChenInstitute of Applied Mycology, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China.
Ting WuInstitute of Applied Mycology, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China.
Yinbing BianKey Laboratory of Agro-Microbial Resource Comprehensive Utilization, Ministry of Agriculture, Huazhong Agricultural University, Wuhan, 430070, China.
Zhangyi XuInstitute of Applied Mycology, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China. zyxu2013@126.com.ORCID http://orcid.org/0000-0002-4603-0067
Huazhong Agricultural University · CN

Funding

the Fundamental Research Funds for the Central Universities 2011QC089the Key Project in the National Science and Technology Pillar Program of China 2011BAI06B03the National Natural Science Foundation of China 31101590
6 · The paper itself

Abstract

Genetic transformation methods reported for Wolfiporia cocos are limited. In this study, we describe an efficient RNA interference (RNAi) system based on Agrobacterium-mediated transformation approach in W. cocos for the first time. Actively growing mycelial plugs were used as recipients for transformation using endogenous orotidine-5'-phosphate decarboxylase gene (URA3) as both a selective marker and a silencing gene, under the control of the dual promoters of Legpd and Leactin from Lentinula edodes and the single promoter of Wcgpd from W. cocos, respectively. The results showed that both the two kinds of promoters effectively drive the expression of URA3 gene, and the URA3-silenced transformants could be selected on CYM medium containing 5'-fluoroorotic acid. In addition, silencing URA3 gene has no effect on the growth of W. cocos hyphae. The incomplete silencing of the URA3 locus was also observed in this study. This study will promote further study on the mechanism of substrate degradation, sclerotial formation, and biosynthesis network of pharmacological compounds in W. cocos.

Indexed as

GenomicsAgrobacteriumCloning, MolecularFungiGene Expression Regulation, FungalGene SilencingOrotidine-5'-Phosphate DecarboxylasePromoter Regions, GeneticRNA InterferenceSequence AnalysisShiitake MushroomsWolfiporiaOrotidine-5'-Phosphate Decarboxylasegene functiongene introductionRNA interfereURA3Wolfiporia cocos

Identifiers

PMID32803511
OpenAlexW3049111175

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.