Evidence map›Paper›PMID 32799327›Full record

ArticleClinical genetics2020

Exome sequencing in patients with microphthalmia, anophthalmia, and coloboma (MAC) from a consanguineous population.

Farrah Islam, Stephanie Htun, Li-Wen Lai, Max Krall, Menitha Poranki, Pierre-Marie Martin, Nara Sobreira, Elizabeth S Wohler, Jingwei Yu, Anthony T Moore and 1 more

Open access · greenAbstract read
In one paragraph

Article in Clinical genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
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  10. Case Report: Identification of a novelFrontiers in genetics · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Farrah IslamDepartment of Ophthalmology, Al-Shifa Eye Trust Hospital, Rawalpindi, Pakistan.
Stephanie HtunDivision of Genetics, Department of Pediatrics, University of California San Francisco, San Francisco, California, USA.
Li-Wen LaiDepartment of Pathology, University of Arizona, Tucson, Arizona, USA.
Max KrallDivision of Genetics, Department of Pediatrics, University of California San Francisco, San Francisco, California, USA.
Menitha PorankiDivision of Genetics, Department of Pediatrics, University of California San Francisco, San Francisco, California, USA.
Pierre-Marie MartinInstitute of Human Genetics, University of California San Francisco, San Francisco, California, USA.
Nara SobreiraMcKusick-Nathans Department of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Elizabeth S WohlerMcKusick-Nathans Department of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Jingwei YuDepartment of Laboratory Medicine, University of California San Francisco, San Francisco, California, USA.ORCID 0000-0002-6299-9708
Anthony T MooreDept. Ophthalmology, University of California San Francisco, San Francisco, California, USA.
Anne M SlavotinekDivision of Genetics, Department of Pediatrics, University of California San Francisco, San Francisco, California, USA.ORCID 0000-0001-7053-2449
University of California, San Francisco · USJohns Hopkins University · USDar Al-Shifa Hospital · PSUniversity of Arizona · US

Funding

Baylor-Johns Hopkins Center for Mendelian GeneticsUM1HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2016 to 2020
$14.5M
Sleep and Circadian Dysfunction, Brain and Neurobehavioral Development in AutismP50HD103538 · NICHD · HUGO W. MOSER RES INST KENNEDY KRIEGER · PI S. Ali Fatemi, Bradley L Schlaggar · 2020 to 2026
$9.9M
NHGRI NIH HHS UM1 HG006542NICHD NIH HHS P50 HD103538
6 · The paper itself

Abstract

Next-generation sequencing strategies have resulted in mutation detection rates of 21% to 61% in small cohorts of patients with microphthalmia, anophthalmia and coloboma (MAC), but despite progress in identifying novel causative genes, many patients remain without a genetic diagnosis. We studied a cohort of 19 patients with MAC who were ascertained from a population with high rates of consanguinity. Using single nucleotide polymorphism (SNP) arrays and whole exome sequencing (WES), we identified one pathogenic variant in TENM3 in a patient with cataracts in addition to MAC. We also detected novel variants of unknown significance in genes that have previously been associated with MAC, including KIF26B, MICU1 and CDON, and identified variants in candidate genes for MAC from the Wnt signaling pathway, comprising LRP6, WNT2B and IQGAP1, but our findings do not prove causality. Plausible variants were not found for many of the cases, indicating that our current understanding of the pathogenesis of MAC, a highly heterogeneous group of ocular defects, remains incomplete.

Indexed as

AnophthalmosCalcium-Binding ProteinsCation Transport ProteinsCell Adhesion MoleculesColobomaConsanguinityExomeExome SequencingFemaleHigh-Throughput Nucleotide SequencingHumansKinesinsMaleMembrane ProteinsMicrophthalmosMitochondrial Membrane Transport ProteinsCalcium-Binding ProteinsCation Transport ProteinsCDON protein, humanCell Adhesion MoleculesKIF26B protein, humanKinesinsMembrane ProteinsMICU1 protein, humanMitochondrial Membrane Transport ProteinsNerve Tissue ProteinsTENM3 protein, humanTumor Suppressor ProteinsAnophthalmiacataractCDONColobomaMicrophthalmiaTENM3

Identifiers

PMID32799327
PMCPMC8077035
OpenAlexW3049178367

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.