Evidence map›Paper›PMID 32797317›Full record

ArticlePlanta2020

SERK genes identification and expression analysis during somatic embryogenesis and sporogenesis of sexual and apomictic Brachiaria brizantha (Syn. Urochloa brizantha).

Andréa D Koehler, André S T Irsigler, Vera T C Carneiro, Glaucia B Cabral, Júlio C M Rodrigues, Ana Cristina M M Gomes, Roberto C Togawa, Marcos M C Costa, Adriana Pinheiro Martinelli, Diva Maria de Alencar Dusi

Abstract read
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In one paragraph

Article in Planta, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 19 citations in OpenAlex.

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  7. An Overview of the Genetics and Genomics of theFrontiers in plant science · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Andréa D KoehlerUniversity of Sao Paulo, CENA, Av. Centenario 303, Piracicaba, SP, 13416-903, Brazil.
André S T IrsiglerBrazilian Agricultural Research Corporation (Embrapa), Embrapa Genetic Resources and Biotechnology, Cx.Postal 02372, Brasília, DF, 70770-917, Brazil.
Vera T C CarneiroBrazilian Agricultural Research Corporation (Embrapa), Embrapa Genetic Resources and Biotechnology, Cx.Postal 02372, Brasília, DF, 70770-917, Brazil.
Glaucia B CabralBrazilian Agricultural Research Corporation (Embrapa), Embrapa Genetic Resources and Biotechnology, Cx.Postal 02372, Brasília, DF, 70770-917, Brazil.
Júlio C M RodriguesBrazilian Agricultural Research Corporation (Embrapa), Embrapa Genetic Resources and Biotechnology, Cx.Postal 02372, Brasília, DF, 70770-917, Brazil.
Ana Cristina M M GomesBrazilian Agricultural Research Corporation (Embrapa), Embrapa Genetic Resources and Biotechnology, Cx.Postal 02372, Brasília, DF, 70770-917, Brazil.
Roberto C TogawaBrazilian Agricultural Research Corporation (Embrapa), Embrapa Genetic Resources and Biotechnology, Cx.Postal 02372, Brasília, DF, 70770-917, Brazil.
Marcos M C CostaBrazilian Agricultural Research Corporation (Embrapa), Embrapa Genetic Resources and Biotechnology, Cx.Postal 02372, Brasília, DF, 70770-917, Brazil.
Adriana Pinheiro MartinelliUniversity of Sao Paulo, CENA, Av. Centenario 303, Piracicaba, SP, 13416-903, Brazil. adriana@cena.usp.br.ORCID http://orcid.org/0000-0003-1278-3930
Diva Maria de Alencar DusiBrazilian Agricultural Research Corporation (Embrapa), Embrapa Genetic Resources and Biotechnology, Cx.Postal 02372, Brasília, DF, 70770-917, Brazil. diva.dusi@embrapa.br.ORCID http://orcid.org/0000-0001-9480-0460
Brazilian Agricultural Research Corporation · BRUniversidade de São Paulo · BR

Funding

DISEASE PREVENTION ANALYSIS OF INTESTINAL METAPLASIAF06TW002008 · FIC · UNIVERSITY OF ARIZONA · PI AICKIN, MIKEL G · 1994 to 1994
–
Conselho Nacional de Desenvolvimento Científico e Tecnológico 141959/2006-1Conselho Nacional de Desenvolvimento Científico e Tecnológico 305785/2008-7Conselho Nacional de Desenvolvimento Científico e Tecnológico 476332/2013-3Empresa Brasileira de Pesquisa Agropecuária 12.14.01.014.00.00Fundação de Apoio à Pesquisa do Distrito Federal 00193.0000039-99
6 · The paper itself

Abstract

MAIN

conclusionIn Brachiaria brizantha BbrizSERK1, BbrizSERK2 and BbrizSERK3 were identified. SERK expression marks somatic embryogenesis, sexual MMC, and sexual and apomictic PMC. BbrizSERK3 might have a regulatory role in reproductive development. Somatic embryogenesis receptor-like kinase (SERK) consists of plasma membrane receptor genes that have been characterized in various species, associated with several aspects of plant development, including reproduction. SERK genes are involved in anther development and in early embryo development in sexual and asexual seed formation. To comprehend the complexity of the SERK genes and their function in Brachiaria reproduction, we performed a homology-based search in a genomic database of a sexual B. brizantha and identified sequences of three SERK genes, BbrizSERK1, BbrizSERK2, and BbrizSERK3. RNASeq data showed equivalent abundance of BbrizSERK1 and BbrizSERK2 transcripts in ovaries at early megasporogenesis of sexuals and apomicts, while BbrizSERK3 transcripts were more abundant in ovaries of sexuals than in apomicts. BbrizSERK3 results in three coding sequences due to alternative splicing, among them Variant 1 results in a protein with all the predicted domains of a SERK. BbrizSERK transcripts were detected in male reproductive tissues of both sexual and apomictic plants, suggesting a role in controlling anther development. BbrizSERK transcripts were detected early in ovule development, in the integuments, and in the megaspore mother cell of the sexual plant, but not in the cells that give rise to apomictic embryo sacs, suggesting a role in female reproductive development of sexuals. This paper provides evidences that SERK genes plays a role in the onset and establishment of somatic embryogenesis and in the reproductive development of B. brizantha and suggests a distinct role of BbrizSERK in apomixis initiation.

Indexed as

Gene Expression Regulation, PlantBrachiariaGene Expression Regulation, DevelopmentalGenes, PlantPlant DevelopmentPlant Somatic Embryogenesis TechniquesReproductionSeedsApomixisForage grassGene splicingMegasporogenesisMicrosporogenesisPlant reproduction

Identifiers

PMID32797317
OpenAlexW3049095016

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.