Evidence map›Paper›PMID 32796921›Full record

ArticleCommunications biology2020

Genetic alterations in the 3q26.31-32 locus confer an aggressive prostate cancer phenotype.

Benjamin S Simpson, Niedzica Camacho, Hayley J Luxton, Hayley Pye, Ron Finn, Susan Heavey, Jason Pitt, Caroline M Moore, Hayley C Whitaker

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Communications biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.4field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Integrated mutational landscape analysis of poorly differentiated high-grade neuroendocrine carcinoma of the uterine cervix.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. Review
  5. Article
  6. The Androgen Regulated lncRNANon-coding RNA · 2022
    Article
  7. Article
  8. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Benjamin S SimpsonMolecular Diagnostics and Therapeutics Group, Research Department of Targeted Intervention, Division of Surgery & Interventional Science, University College London, London, UK.ORCID http://orcid.org/0000-0003-3685-6110
Niedzica CamachoHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Hayley J LuxtonMolecular Diagnostics and Therapeutics Group, Research Department of Targeted Intervention, Division of Surgery & Interventional Science, University College London, London, UK.ORCID http://orcid.org/0000-0003-1431-3844
Hayley PyeMolecular Diagnostics and Therapeutics Group, Research Department of Targeted Intervention, Division of Surgery & Interventional Science, University College London, London, UK.ORCID http://orcid.org/0000-0001-7042-5416
Ron FinnMolecular Diagnostics and Therapeutics Group, Research Department of Targeted Intervention, Division of Surgery & Interventional Science, University College London, London, UK.
Susan HeaveyMolecular Diagnostics and Therapeutics Group, Research Department of Targeted Intervention, Division of Surgery & Interventional Science, University College London, London, UK.ORCID http://orcid.org/0000-0002-2974-4578
Jason PittCancer Institute of Singapore, National University of Singapore, Singapore, Singapore.
Caroline M MooreDepartment of Urology, UCLH NHS Foundation Trust, London, UK.
Hayley C WhitakerMolecular Diagnostics and Therapeutics Group, Research Department of Targeted Intervention, Division of Surgery & Interventional Science, University College London, London, UK. Hayley.Whitaker@ucl.ac.uk.ORCID http://orcid.org/0000-0002-2695-0202
University College London · GBEarly Intervention Foundation · GBMemorial Sloan Kettering Cancer Center · USNational University of Singapore · SGUniversity College Hospital · GB

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
Cancer Research UKNCI NIH HHS P30 CA008748
6 · The paper itself

Abstract

Large-scale genetic aberrations that underpin prostate cancer development and progression, such as copy-number alterations (CNAs), have been described but the consequences of specific changes in many identified loci is limited. Germline SNPs in the 3q26.31 locus are associated with aggressive prostate cancer, and is the location of NAALADL2, a gene overexpressed in aggressive disease. The closest gene to NAALADL2 is TBL1XR1, which is implicated in tumour development and progression. Using publicly-available cancer genomic data we report that NAALADL2 and TBL1XR1 gains/amplifications are more prevalent in aggressive sub-types of prostate cancer when compared to primary cohorts. In primary disease, gains/amplifications occurred in 15.99% (95% CI: 13.02-18.95) and 14.96% (95% CI: 12.08-17.84%) for NAALADL2 and TBL1XR1 respectively, increasing in frequency in higher Gleason grade and stage tumours. Gains/amplifications result in transcriptional changes and the development of a pro-proliferative and aggressive phenotype. These results support a pivotal role for copy-number gains in this genetic region.

Indexed as

Genetic LociGenetic VariationChromosomes, Human, Pair 3Cohort StudiesDNA Copy Number VariationsGene AmplificationGenome, HumanHumansMaleNeoplasm InvasivenessOncogenesPhenotypeProstatic NeoplasmsTranscription, GeneticTranscriptome

Identifiers

PMID32796921
PMCPMC7429505
OpenAlexW3049141440

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.