Evidence map›Paper›PMID 32796037›Full record

ArticleThe Journal of biological chemistry2020

The DUF328 family member YaaA is a DNA-binding protein with a novel fold.

Janani Prahlad, Yifeng Yuan, Jiusheng Lin, Chou-Wei Chang, Dirk Iwata-Reuyl, Yilun Liu, Valérie de Crécy-Lagard, Mark A Wilson

Open access · hybridAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in The Journal of biological chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.4field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Biosynthesis and function of 7-deazaguanine derivatives in bacteria and phages.Microbiology and molecular biology reviews : MMBR · 2024
    Review
  5. Proteomic survey of the DNA damage response inJournal of bacteriology · 2023
    Article
  6. Proteomic survey of the DNA damage response inbioRxiv : the preprint server for biology · 2023
    Article
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Janani PrahladDepartment of Biochemistry and Redox Biology Center, University of Nebraska, Lincoln, Nebraska, USA.
Yifeng YuanDepartment of Microbiology and Cell Science, University of Florida, Gainesville, Florida, USA.ORCID 0000-0002-9549-2698
Jiusheng LinDepartment of Biochemistry and Redox Biology Center, University of Nebraska, Lincoln, Nebraska, USA.
Chou-Wei ChangDepartment of Cancer Genetics and Epigenetics, Beckman Research Institute, City of Hope, Duarte, California, USA.ORCID 0000-0002-3491-2601
Dirk Iwata-ReuylDepartment of Chemistry, Portland State University, Portland, Oregon, USA.
Yilun LiuDepartment of Cancer Genetics and Epigenetics, Beckman Research Institute, City of Hope, Duarte, California, USA.ORCID 0000-0001-6884-8487
Valérie de Crécy-LagardDepartment of Microbiology and Cell Science, University of Florida, Gainesville, Florida, USA vcrecy@ufl.edu mwilson13@unl.edu.ORCID 0000-0002-9955-3785
Mark A WilsonDepartment of Biochemistry and Redox Biology Center, University of Nebraska, Lincoln, Nebraska, USA vcrecy@ufl.edu mwilson13@unl.edu.
University of Nebraska–Lincoln · USCity of Hope · USUniversity of Florida · USPortland State University · US

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
Regulation of Ionizing Radiation-Induced DNA Damage ResponseR01CA130899 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LIU, YILUN · 2009 to 2023
$5.5M
Synthesis and function of Queuosine in BacteriaR01GM070641 · NIGMS · UNIVERSITY OF FLORIDA · PI DE CRECY-LAGARD, VALERIE A · 2006 to 2023
$5.3M
RECQ5-dependent SUMO2 conjugation of PCNA in the resolution of transcription-replication conflictsR01CA225843 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI LIU, YILUN · 2019 to 2023
$2.0M
The function of Topoisomerase I SUMOylation in transcription and chemoresistanceR01GM127602 · NIGMS · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI LIU, YILUN · 2018 to 2021
$1.4M
Redox Regulation of DJ-1 FunctionR01GM092999 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI WILSON, MARK A. · 2010 to 2014
$1.3M
NCI NIH HHS R01 CA130899NCI NIH HHS R01 CA225843NIGMS NIH HHS P41 GM103311NIGMS NIH HHS P41 GM103393NIGMS NIH HHS R01 GM070641NIGMS NIH HHS R01 GM092999NIGMS NIH HHS R01 GM127602
6 · The paper itself

Abstract

DUF328 family proteins are present in many prokaryotes; however, their molecular activities are unknown. The

Indexed as

Protein FoldingCrystallography, X-RayDNA, BacterialDNA-Binding ProteinsDNA RepairEscherichia coliEscherichia coli ProteinsOxidative StressProtein DomainsDNA, BacterialDNA-Binding ProteinsEscherichia coli ProteinsYaaA protein, E colibacterial stress responsebioinformaticscomparative genomicsDNA bindingDNA-binding proteinoxidative stressstress responseUPF0246X-ray crystallography

Identifiers

PMID32796037
PMCPMC7549036
OpenAlexW3049626457

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.