Evidence map›Paper›PMID 32794659›Full record

ArticleJournal of cellular and molecular medicine2020

Hypomethylation of the promoter region drives ectopic expression of TMEM244 in Sézary cells.

Katarzyna Iżykowska, Karolina Rassek, Magdalena Żurawek, Karina Nowicka, Julia Paczkowska, Iwona Ziółkowska-Suchanek, Marta Podralska, Agnieszka Dzikiewicz-Krawczyk, Monika Joks, Karolina Olek-Hrab and 2 more

Abstract read
In one paragraph

Article in Journal of cellular and molecular medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. International journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Katarzyna IżykowskaInstitute of Human Genetics, Polish Academy of Sciences, Poznań, Poland.ORCID 0000-0002-3855-4223
Karolina RassekInstitute of Human Genetics, Polish Academy of Sciences, Poznań, Poland.ORCID 0000-0001-7758-7151
Magdalena ŻurawekInstitute of Human Genetics, Polish Academy of Sciences, Poznań, Poland.ORCID 0000-0002-0345-4054
Karina NowickaInstitute of Human Genetics, Polish Academy of Sciences, Poznań, Poland.ORCID 0000-0001-9048-0324
Julia PaczkowskaInstitute of Human Genetics, Polish Academy of Sciences, Poznań, Poland.ORCID 0000-0002-3976-4353
Iwona Ziółkowska-SuchanekInstitute of Human Genetics, Polish Academy of Sciences, Poznań, Poland.ORCID 0000-0001-8813-5003
Marta PodralskaInstitute of Human Genetics, Polish Academy of Sciences, Poznań, Poland.ORCID 0000-0001-9720-7881
Agnieszka Dzikiewicz-KrawczykInstitute of Human Genetics, Polish Academy of Sciences, Poznań, Poland.ORCID 0000-0001-7633-2114
Monika JoksDepartment of Hematology and Marrow Transplantation, University of Medical Sciences, Poznań, Poland.ORCID 0000-0002-7965-9873
Karolina Olek-HrabDepartment of Dermatology, University of Medical Sciences, Poznań, Poland.ORCID 0000-0003-4188-4837
Maciej GiefingInstitute of Human Genetics, Polish Academy of Sciences, Poznań, Poland.ORCID 0000-0002-4760-8246
Grzegorz K PrzybylskiInstitute of Human Genetics, Polish Academy of Sciences, Poznań, Poland.ORCID 0000-0001-5783-1567

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sézary syndrome (SS) is an aggressive form of cutaneous T-cell lymphoma (CTCL) characterized by the presence of circulating malignant CD4+ T cells (Sézary cells) with many complex changes in the genome, transcriptome and epigenome. Epigenetic dysregulation seems to have an important role in the development and progression of SS as it was shown that SS cells are characterized by widespread changes in DNA methylation. In this study, we show that the transmembrane protein coding gene TMEM244 is ectopically expressed in all SS patients and SS-derived cell lines and, to a lower extent, in mycosis fungoides and in a fraction of T-cell lymphomas, but not in B-cell malignancies and mononuclear cells of healthy individuals. We show that in patient samples and in the T-cell lines TMEM244 expression is negatively correlated with the methylation level of its promoter. Furthermore, we demonstrate that TMEM244 expression can be activated in vitro by the CRISPR-dCas9-induced specific demethylation of TMEM244 promoter region. Since both, TMEM244 expression and its promoter demethylation, are not detected in normal lymphoid cells, they can be potentially used as markers in Sézary syndrome and some other T-cell lymphomas.

Indexed as

DNA MethylationAgedAged, 80 and overCell Line, TumorCRISPR-Cas SystemsFemaleGene Expression RegulationGenetic VectorsHematologic NeoplasmsHumansLymphoma, Non-HodgkinMaleMembrane ProteinsMiddle AgedMycosis FungoidesNeoplasm ProteinsC2CD2L protein, humanMembrane ProteinsNeoplasm ProteinsCRISPR-dCas9DNA methylationSézary syndromeTET1TMEM244

Identifiers

PMID32794659
PMCPMC7521334

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.