Evidence map›Paper›PMID 32790864›Full record

ArticleGenome biology and evolution2020

Expression Evolution of Ancestral XY Gametologs across All Major Groups of Placental Mammals.

Mónica Martínez-Pacheco, Mariela Tenorio, Laura Almonte, Vicente Fajardo, Alan Godínez, Diego Fernández, Paola Cornejo-Páramo, Karina Díaz-Barba, Jean Halbert, Angelica Liechti and 3 more

Abstract readComparative Study
In one paragraph

Article in Genome biology and evolution, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Sex Chromosome Evolution: Hallmarks and Question Marks.Molecular biology and evolution · 2024
    Review
  6. Article
  7. Compensation of gene dosage on the mammalian X.Development (Cambridge, England) · 2024
    Review
  8. Review
  9. Article
  10. Article
  11. Structural shifts in primate Y.Nature ecology & evolution · 2023
    Article
  12. Article
  13. A Cross-Species Neuroimaging Study of Sex Chromosome Dosage Effects on Human and Mouse Brain Anatomy.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2023
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Mónica Martínez-PachecoCenter for Genome Sciences, UNAM, Cuernavaca, Mexico.
Mariela TenorioCenter for Genome Sciences, UNAM, Cuernavaca, Mexico.
Laura AlmonteCenter for Genome Sciences, UNAM, Cuernavaca, Mexico.
Vicente FajardoCenter for Genome Sciences, UNAM, Cuernavaca, Mexico.
Alan GodínezCenter for Genome Sciences, UNAM, Cuernavaca, Mexico.
Diego FernándezCenter for Genome Sciences, UNAM, Cuernavaca, Mexico.
Paola Cornejo-PáramoCenter for Genome Sciences, UNAM, Cuernavaca, Mexico.
Karina Díaz-BarbaCenter for Genome Sciences, UNAM, Cuernavaca, Mexico.
Jean HalbertCenter for Integrative Genomics, University of Lausanne, Switzerland.
Angelica LiechtiCenter for Integrative Genomics, University of Lausanne, Switzerland.
Tamas SzékelyMilner Centre for Evolution, Department of Biology and Biochemistry, University of Bath, Claverton Down, Bath, United Kingdom.
Araxi O UrrutiaMilner Centre for Evolution, Department of Biology and Biochemistry, University of Bath, Claverton Down, Bath, United Kingdom.
Diego CortezCenter for Genome Sciences, UNAM, Cuernavaca, Mexico.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Placental mammals present 180 million-year-old Y chromosomes that have retained a handful of dosage-sensitive genes. However, the expression evolution of Y-linked genes across placental groups has remained largely unexplored. Here, we expanded the number of Y gametolog sequences by analyzing ten additional species from previously unexplored groups. We detected seven remarkably conserved genes across 25 placental species with known Y repertoires. We then used RNA-seq data from 17 placental mammals to unveil the expression evolution of XY gametologs. We found that Y gametologs followed, on average, a 3-fold expression loss and that X gametologs also experienced some expression reduction, particularly in primates. Y gametologs gained testis specificity through an accelerated expression decay in somatic tissues. Moreover, despite the substantial expression decay of Y genes, the combined expression of XY gametologs in males is higher than that of both X gametologs in females. Finally, our work describes several features of the Y chromosome in the last common mammalian ancestor.

Indexed as

Biological EvolutionGene ExpressionGenes, X-LinkedGenes, Y-LinkedAnimalsBase SequenceConserved SequenceDosage Compensation, GeneticEutheriaFemaleHumansMaleOrgan Specificitydosage compensation mechanismsgene expression levelsplacental mammalssex chromosomesY chromosome

Identifiers

PMID32790864
PMCPMC7674692

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.