Evidence map›Paper›PMID 32789543›Full record

ArticlePlant cell reports2020

A peak in global DNA methylation is a key step to initiate the somatic embryogenesis of coconut palm (Cocos nucifera L).

Pedro Osorio-Montalvo, Clelia De-la-Peña, Carlos Oropeza, Geovanny Nic-Can, Iván Córdova-Lara, Eduardo Castillo-Castro, Luis Sáenz-Carbonell

Abstract read
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In one paragraph

Article in Plant cell reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 29 citations in OpenAlex.

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  11. Molecular Determinants ofFrontiers in plant science · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Pedro Osorio-MontalvoCentro de Investigación Científica de Yucatán, Unidad de Biotecnología, Calle 43 No. 130, entre 32 y 34, Col. Chuburná de Hidalgo, 97205, Mérida, Yucatán, México.
Clelia De-la-PeñaCentro de Investigación Científica de Yucatán, Unidad de Biotecnología, Calle 43 No. 130, entre 32 y 34, Col. Chuburná de Hidalgo, 97205, Mérida, Yucatán, México.
Carlos OropezaCentro de Investigación Científica de Yucatán, Unidad de Biotecnología, Calle 43 No. 130, entre 32 y 34, Col. Chuburná de Hidalgo, 97205, Mérida, Yucatán, México.
Geovanny Nic-CanCONACYT-Campus de Ciencias Exactas e Ingeniería, Universidad Autónoma de Yucatán, Mérida, Yucatán, México.
Iván Córdova-LaraCentro de Investigación Científica de Yucatán, Unidad de Biotecnología, Calle 43 No. 130, entre 32 y 34, Col. Chuburná de Hidalgo, 97205, Mérida, Yucatán, México.
Eduardo Castillo-CastroCentro de Investigación Científica de Yucatán, Unidad de Biotecnología, Calle 43 No. 130, entre 32 y 34, Col. Chuburná de Hidalgo, 97205, Mérida, Yucatán, México.
Luis Sáenz-CarbonellCentro de Investigación Científica de Yucatán, Unidad de Biotecnología, Calle 43 No. 130, entre 32 y 34, Col. Chuburná de Hidalgo, 97205, Mérida, Yucatán, México. vyca@cicy.mx.ORCID http://orcid.org/0000-0003-0739-2206
Secretaría de Investigación, Innovación y Educación Superior · MXAutonomous University of Yucatán · MX

Funding

CONACYT CB2016-285898
6 · The paper itself

Abstract

key messageDNA methylation, morphogenesis and gene expression during the somatic embryogenesis of Coconut are affected by 5-Azacytidine pretreatments, indicating that DNA methylation is an important factor throughout this process. Somatic embryogenesis (SE) is a process that can aid in the production of elite Cocos nucifera palms. It has been well established that epigenetic mechanisms are regulators of cell differentiation programs; however, their role in the coconut somatic embryogenesis has not yet been addressed. To this end, the morphogenetic changes, the global DNA methylation and the expression profiles of the SE-related genes and DNA methyltransferases genes were evaluated during the SE process, with and without the presence of 5-Azacytidine (AzaC). The results show that three days of pretreatments with 15 µM and 20 µM of AzaC significantly increased early somatic embryo formation (four- and tenfold, respectively). A clear peak of the global percentage of DNA methylation (approximately 13%) was determined at the beginning of the culture, followed by a re-establishing stage and a steady increase thereafter; in all cases, the levels of DNA methylation were lower after the pretreatments with AzaC. Additionally, the expression profiles of the SERK, WUS, BBM and LEC genes are modulated during the SE process and the pretreatments with AzaC affect the expression profiles of these genes, even at early stages. Furthermore, increased levels of expression were observed for the genes encoding for DNA methyltransferases (MET, CMT and DRM) at early and late stages of SE, indicating that DNA methylation is an important factor throughout the SE.

Indexed as

Plant Somatic Embryogenesis TechniquesAzacitidineCocosDNA MethylationGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantMethyltransferasesMorphogenesisPlant ProteinsAzacitidineMethyltransferasesPlant Proteins5-AzacytidineEpigeneticsGene expressionIn vitro tissue culture

Identifiers

PMID32789543
OpenAlexW3048883891

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.