Evidence map›Paper›PMID 32787014›Full record

ArticleLangmuir : the ACS journal of surfaces and colloids2020

Gelling without Structuring: A SAXS Study of the Interactions among DNA Nanostars.

Francesco Spinozzi, Maria Grazia Ortore, Giovanni Nava, Francesca Bomboi, Federica Carducci, Heinz Amenitsch, Tommaso Bellini, Francesco Sciortino, Paolo Mariani

Abstract read
In one paragraph

Article in Langmuir : the ACS journal of surfaces and colloids, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Francesco SpinozziDepartment of Life and Environmental Sciences, Polytechnic University of Marche, 60131 Ancona, Italy.ORCID 0000-0002-0693-5582
Maria Grazia OrtoreDepartment of Life and Environmental Sciences, Polytechnic University of Marche, 60131 Ancona, Italy.ORCID 0000-0002-2719-6184
Giovanni NavaDepartment of Medical Biotechnology and Translational Medicine, Università degli Studi di Milano, 20133 Milan, Italy.
Francesca BomboiDepartment of Physics, Sapienza, Università di Roma, 00185 Rome, Italy.
Federica CarducciDepartment of Life and Environmental Sciences, Polytechnic University of Marche, 60131 Ancona, Italy.
Heinz AmenitschInstitute for Inorganic Chemistry, Graz University of Technology, 8010 Graz, Austria.
Tommaso BelliniDepartment of Medical Biotechnology and Translational Medicine, Università degli Studi di Milano, 20133 Milan, Italy.ORCID 0000-0003-4898-4400
Francesco SciortinoDepartment of Physics, Sapienza, Università di Roma, 00185 Rome, Italy.ORCID 0000-0002-2418-2713
Paolo MarianiDepartment of Life and Environmental Sciences, Polytechnic University of Marche, 60131 Ancona, Italy.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We evaluate, by means of synchrotron small-angle X-ray scattering, the shape and mutual interactions of DNA tetravalent nanostars as a function of temperature in both the gas-like state and across the gel transition. To this end, we calculate the form factor from coarse-grained molecular dynamics simulations with a novel method that includes hydration effects; we approximate the radial interaction of DNA nanostars as a hard-sphere potential complemented by a repulsive and an attractive Yukawa term; and we predict the structure factors by exploiting the perturbative random phase approximation of the Percus-Yevick equation. Our approach enables us to fit all the data by selecting the particle radius and the width and amplitude of the attractive potential as free parameters. We determine the evolution of the structure factor across gelation and detect subtle changes of the effective interparticle interactions, that we associate to the temperature and concentration dependence of the particle size. Despite the approximations, the approach here adopted offers new detailed insights into the structure and interparticle interactions of this fascinating system.

Indexed as

ColloidsDNAGelsScattering, Small AngleX-Ray DiffractionColloidsDNAGels

Identifiers

PMID32787014
PMCPMC8010795

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.