Evidence map›Paper›PMID 32785167›Full record

ArticleCancers2020

PCR-Free Detection of Long Non-Coding HOTAIR RNA in Ovarian Cancer Cell Lines and Plasma Samples.

Narshone Soda, Muhammad Umer, Navid Kashaninejad, Surasak Kasetsirikul, Richard Kline, Carlos Salomon, Nam-Trung Nguyen, Muhammad J A Shiddiky

Open access · goldAbstract read
In one paragraph

Article in Cancers, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Narshone SodaSchool of Environment and Science (ESC), Griffith University, Nathan Campus, QLD 4111, Australia.ORCID 0000-0002-1921-7176
Muhammad UmerQueensland Micro-and Nanotechnology Centre (QMNC), Griffith University, Nathan Campus, QLD 4111, Australia.ORCID 0000-0001-9983-0087
Navid KashaninejadQueensland Micro-and Nanotechnology Centre (QMNC), Griffith University, Nathan Campus, QLD 4111, Australia.ORCID 0000-0002-4385-7771
Surasak KasetsirikulQueensland Micro-and Nanotechnology Centre (QMNC), Griffith University, Nathan Campus, QLD 4111, Australia.
Richard KlineSection of Gynecologic Oncology, Ochsner Clinic Foundation, New Orleans, LA 70121, USA.
Carlos SalomonSection of Gynecologic Oncology, Ochsner Clinic Foundation, New Orleans, LA 70121, USA.ORCID 0000-0003-4474-0046
Nam-Trung NguyenQueensland Micro-and Nanotechnology Centre (QMNC), Griffith University, Nathan Campus, QLD 4111, Australia.ORCID 0000-0003-3626-5361
Muhammad J A ShiddikySchool of Environment and Science (ESC), Griffith University, Nathan Campus, QLD 4111, Australia.
Griffith University · AUOchsner Medical Center · USThe University of Queensland · AU

Funding

Australian Research Council (ARC) Discovery Project DP180100055Australian Research Council (ARC) Discovery Project DP190102944Griffith University International Postgraduate Research Scholarship GUIPRS
6 · The paper itself

Abstract

Long non-coding RNA HOX transcript antisense intergenic RNA (HOTAIR) is one of the promising biomarkers that has widely been used in determining the stages of many cancers, including ovarian cancer. In cancer diagnostics, the two key analytical challenges for detecting long non-coding RNA biomarkers are i) the low concentration levels (nM to fM range) in which they are found and ii) the analytical method where broad dynamic range is required (four to six orders of magnitude) due to the large variation in expression levels for different HOTAIR RNAs. To meet these challenges, we report on a biosensing platform for the visual (colorimetric) estimation and subsequent electrochemical quantification of ovarian-cancer-specific HOTAIR using a screen-printed gold electrode (SPE-Au). Our assay utilizes a two-step strategy that involves (i) magnetic isolation and purification of target HOTAIR sequences and (ii) subsequent detection of isolated sequences using a sandwich hybridization coupled with horseradish peroxidase (HRP)-catalyzed reaction of 3,3',5,5'-tetramethylbenzidine (TMB) in the presence of hydrogen peroxide. The assay achieved a detection limit of 1.0 fM HOTAIR in spiked buffer samples with excellent reproducibility (% RSD ≤ 5%, for

Indexed as

electrochemical detectionHOTAIR RNAnaked-eye detectionovarian can cer

Identifiers

PMID32785167
PMCPMC7465380
OpenAlexW3048283281

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.