Evidence map›Paper›PMID 32783137›Full record

ArticleJournal of assisted reproduction and genetics2020

A whole-genome sequencing-based novel preimplantation genetic testing method for de novo mutations combined with chromosomal balanced translocations.

Ping Yuan, Jun Xia, Songbang Ou, Ping Liu, Tao Du, Lingyan Zheng, Xuyang Yin, Lin Xie, Sijia Zhang, Huijuan Yan and 5 more

Open access · greenAbstract read
In one paragraph

Article in Journal of assisted reproduction and genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
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  5. Review
  6. Article
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  10. Review
  11. Expanded clinical validation of Haploseek for comprehensive preimplantation genetic testing.Genetics in medicine : official journal of the American College of Medical Genetics · 2021
    Article
  12. The Molecular Genetics of Marfan Syndrome.International journal of medical sciences · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 1 country.

Ping YuanIVF Center, Department of Obstetrics and Gynecology, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, Guangzhou, 510120, Guangdong, China.
Jun XiaMGI, BGI-Shenzhen, Shenzhen, 518083, Guangdong, China.
Songbang OuIVF Center, Department of Obstetrics and Gynecology, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, Guangzhou, 510120, Guangdong, China.
Ping LiuMGI, BGI-Shenzhen, Shenzhen, 518083, Guangdong, China.
Tao DuDepartment of Obstetrics, Department of Obstetrics and Gynecology, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, Guangzhou, 510120, Guangdong, China.
Lingyan ZhengIVF Center, Department of Obstetrics and Gynecology, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, Guangzhou, 510120, Guangdong, China.
Xuyang YinMGI, BGI-Shenzhen, Shenzhen, 518083, Guangdong, China.
Lin XieMGI, BGI-Shenzhen, Shenzhen, 518083, Guangdong, China.
Sijia ZhangMGI, BGI-Shenzhen, Shenzhen, 518083, Guangdong, China.
Huijuan YanMGI, BGI-Shenzhen, Shenzhen, 518083, Guangdong, China.
Ya GaoBGI-Shenzhen, Shenzhen, 518083, Guangdong, China.
Qingxue ZhangIVF Center, Department of Obstetrics and Gynecology, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, Guangzhou, 510120, Guangdong, China.
Hui JiangMGI, BGI-Shenzhen, Shenzhen, 518083, Guangdong, China.
Fang ChenMGI, BGI-Shenzhen, Shenzhen, 518083, Guangdong, China. fangchen@genomics.cn.
Wenjun WangIVF Center, Department of Obstetrics and Gynecology, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, Guangzhou, 510120, Guangdong, China. wangwenjunsys@163.com.ORCID http://orcid.org/0000-0002-2384-6653
BGI Group (China) · CNSun Yat-sen University · CN

Funding

the Chinese Medical Association clinical medical research special fund, Research and development of young physicians in reproductive medicine 18010060735the National Natural Science Foundation of China 81801431the Shenzhen Birth Defect Screening Project Lab JZF No. [2016] 750the Shenzhen Municipal Government of China JCYJ20170412152854656
6 · The paper itself

Abstract

purposeTo explore a new preimplantation genetic testing (PGT) method for de novo mutations (DNMs) combined with chromosomal balanced translocations by whole-genome sequencing (WGS) using the MGISEQ-2000 sequencer.

methodsTwo families, one with maternal Olmsted syndrome caused by DNM (c.1246C>T) in TRPV3 and a paternal Robertsonian translocation and one with paternal Marfan syndrome caused by DNM (c.4952_4955delAATG) in FBN1 and a maternal reciprocal translocation, underwent PGT for monogenetic disease (PGT-M), chromosomal aneuploidy, and structural rearrangement. WGS of embryos and family members were performed. Bioinformatics analysis based on gradient sequencing depth was performed, and parent-embryo haplotyping was conducted for DNM diagnosis. Sanger sequencing, karyotyping, and chromosomal microarray analysis were performed using an amniotic fluid sample to confirm the PGT results.

resultsAfter 1 PGT cycle, WGS of 2 embryos from the Olmsted syndrome family revealed euploid embryos without DNMs; after 2 cycles, the 11 embryos from the Marfan syndrome family showed only 1 normal embryo without DNM, copy number variations (CNVs), or aneuploidy. Moreover, 1 blastocyst from the Marfan syndrome family was transferred back to the uterus; the amniocentesis test results were confirmed by PGT and a healthy infant was born.

conclusionsWGS based on parent-embryo haplotypes was an effective strategy for PGT of DNMs combined with a chromosomal balanced translocation. Our results indicate this is a reliable and effective diagnostic method that is useful for clinical application in PGT of patients with DNMs.

Indexed as

AdultBlastocystChromosome DisordersDNA Copy Number VariationsEmbryo TransferFemaleFertilization in VitroGenetic TestingGenome, HumanHaplotypesHumansKaryotypingMutationPregnancyPreimplantation DiagnosisTranslocation, GeneticChromosomal balanced translocationDe novo mutationPreimplantation genetic testingWhole-genome sequencing

Identifiers

PMID32783137
PMCPMC7550397
OpenAlexW3048573041

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.