Evidence map›Paper›PMID 32782948›Full record

ArticleJGH open : an open access journal of gastroenterology and hepatology2020

Repertoire analysis of memory T-cell receptors in Japanese patients with inflammatory bowel disease.

Yoichi Kakuta, Takeru Nakano, Takeo Naito, Kazuhiro Watanabe, Yasuhiro Izumiyama, Daisuke Okamoto, Ryo Ichikawa, Rintaro Moroi, Masatake Kuroha, Yoshitake Kanazawa and 6 more

Open access · goldAbstract read
In one paragraph

Article in JGH open : an open access journal of gastroenterology and hepatology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 1 institution in 1 country.

Yoichi KakutaDivision of Gastroenterology Tohoku University Graduate School of Medicine Sendai Japan.ORCID https://orcid.org/0000-0002-7042-009X
Takeru NakanoDivision of Gastroenterology Tohoku University Graduate School of Medicine Sendai Japan.
Takeo NaitoDivision of Gastroenterology Tohoku University Graduate School of Medicine Sendai Japan.
Kazuhiro WatanabeDepartment of Surgery Tohoku University Graduate School of Medicine Sendai Japan.
Yasuhiro IzumiyamaDivision of Gastroenterology Tohoku University Graduate School of Medicine Sendai Japan.
Daisuke OkamotoDivision of Gastroenterology Tohoku University Graduate School of Medicine Sendai Japan.
Ryo IchikawaDivision of Gastroenterology Tohoku University Graduate School of Medicine Sendai Japan.
Rintaro MoroiDivision of Gastroenterology Tohoku University Graduate School of Medicine Sendai Japan.
Masatake KurohaDivision of Gastroenterology Tohoku University Graduate School of Medicine Sendai Japan.
Yoshitake KanazawaDivision of Gastroenterology Tohoku University Graduate School of Medicine Sendai Japan.
Tomoya KimuraDivision of Gastroenterology Tohoku University Graduate School of Medicine Sendai Japan.
Hisashi ShigaDivision of Gastroenterology Tohoku University Graduate School of Medicine Sendai Japan.ORCID https://orcid.org/0000-0001-6623-2603
Takeshi NaitohDepartment of Surgery Tohoku University Graduate School of Medicine Sendai Japan.
Yoshitaka KinouchiStudent Health Care Center, Institute for Excellence in Higher Education Tohoku University Sendai Japan.
Michiaki UnnoDepartment of Surgery Tohoku University Graduate School of Medicine Sendai Japan.
Atsushi MasamuneDivision of Gastroenterology Tohoku University Graduate School of Medicine Sendai Japan.
Tohoku University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BACKGROUND AND

aimThe T-cell receptor (TCR) repertoire was assessed in response to various antigens and was considered to be associated with the pathogenesis of inflammatory bowel disease (IBD). Thus, we performed TCR repertoire analysis to examine the pathology of IBD from changes in the TCR repertoire of memory T cells in the intestinal lamina propria mononuclear cells (LPMCs) and peripheral blood mononuclear cells (PBMCs) of patients with IBD.

methodsLPMCs in the surgical specimens and PBMCs were isolated from 12 patients with IBD (5 patients with ulcerative colitis [UC] and 7 patients with Crohn's disease [CD]). PBMCs were collected from 10 healthy individuals as controls. Comprehensive TCR sequence analyses of adaptor-ligation polymerase chain reaction (PCR) products were performed using MiSeq.

resultsThe diversity of TCR-α and TCR-β in PBMCs was significantly lower in patients with IBD than that in controls (

conclusionThe diversity of TCR clones in LPMCs and PBMCs in patients with IBD was significantly lower than that of PBMCs in controls. TCR diversity in PBMCs was particularly low in patients with CD.

Indexed as

inflammatory bowel diseaserepertoireT‐cell receptor

Identifiers

PMID32782948
PMCPMC7411559
OpenAlexW3005108970

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.