Evidence map›Paper›PMID 32782676›Full record

ArticleInternational journal of clinical and experimental pathology2020

A genome-wide analysis reveals the MeCP2-dependent regulation of genes in BGC-823 cells.

Ying-Xun Liu, Lin-Yuan Li, Zhi-Jun Diao, Yu-Meng He, Ying Chen, Ni Hou, Ling-Yu Zhao, Chen Huang

Open access · greenAbstract read
In one paragraph

Article in International journal of clinical and experimental pathology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 90% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 0 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Ying-Xun LiuKey Laboratory of Modern Teaching Technology, Ministry of Education, Shaanxi Normal University Xi'an 710062, China.
Lin-Yuan LiKey Laboratory of Modern Teaching Technology, Ministry of Education, Shaanxi Normal University Xi'an 710062, China.
Zhi-Jun DiaoKey Laboratory of Modern Teaching Technology, Ministry of Education, Shaanxi Normal University Xi'an 710062, China.
Yu-Meng HeKey Laboratory of Modern Teaching Technology, Ministry of Education, Shaanxi Normal University Xi'an 710062, China.
Ying ChenSchool of Medical Technology, Xuzhou Medical University Xuzhou 221004, China.
Ni HouDepartment of Cell Biology and Genetics, School of Basic Medical Sciences, Xi'an Jiaotong University Health Science Center Xi'an 710061, China.
Ling-Yu ZhaoDepartment of Cell Biology and Genetics, School of Basic Medical Sciences, Xi'an Jiaotong University Health Science Center Xi'an 710061, China.
Chen HuangDepartment of Cell Biology and Genetics, School of Basic Medical Sciences, Xi'an Jiaotong University Health Science Center Xi'an 710061, China.
Shaanxi Normal University · CNXi'an Jiaotong University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Methyl-CpG-binding protein 2 (MeCP2) epigenetically modulates gene expression through genome-wide binding to methylated CpG dinucleotides. This study aimed to evaluate the effect of MeCP2 on the global gene expression profile of human gastric adenocarcinoma to determine the potential molecular mechanism of MeCP2. To identify the gene targets of MeCP2 in gastric cancer cells, we combined the expression microarray and chromatin immunoprecipitation approaches of MeCP2, followed by sequencing (ChIP-seq) to define the MeCP2-binding sites across the whole genome. The methylation levels of the promoters in BGC-823 cells were downloaded from the National Center for Biotechnology Information Gene Expression Omnibus database (GSM1093053). A total of 5,684 ChIP-enriched peaks were identified by comparing IP and Input, using a

Indexed as

binding siteChIP-seqgastric cancerMethyl-CpG-binding proteinsi-MeCP2

Identifiers

PMID32782676
PMCPMC7414497
OpenAlexW3049161638

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.