Evidence map›Paper›PMID 32782019›Full record

ArticleBMC research notes2020

Transcriptomic analyses reveal the expression and regulation of genes associated with resistance to early leaf spot in peanut.

Limin Gong, Suoyi Han, Mei Yuan, Xingli Ma, Austin Hagan, Guohao He

Open access · goldAbstract read
In one paragraph

Article in BMC research notes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Genome-wide association mapping for LLS resistance in a MAGIC population of groundnut (Arachis hypogaea L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  5. The genusFrontiers in plant science · 2023
    Review
  6. Review
  7. Article
  8. Base Editing in Peanut Using CRISPR/nCas9.Frontiers in genome editing · 2022
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Limin GongTuskegee University, Tuskegee, AL, 36088, USA.
Suoyi HanHenan Academy of Agricultural Sciences, Zhengzhou, 450002, China.
Mei YuanShandong Peanut Research Institute, Qingdao, 266000, China.
Xingli MaHenan Agricultural University, Zhengzhou, 450002, China.
Austin HaganAuburn University, Auburn, AL, 36830, USA.
Guohao HeTuskegee University, Tuskegee, AL, 36088, USA. ghe@tuskegee.edu.ORCID http://orcid.org/0000-0001-5350-7786
Tuskegee University · USAuburn University · USHenan Academy of Agricultural Sciences · CNHenan Agricultural University · CN

Funding

Major R&D and Promotion Projects in Henan, China 182102110137National Natural Science Foundation of China 31871663USDA-NIFA 2014-38821-22453
6 · The paper itself

Abstract

objectiveEarly leaf spot (ELS) caused by Cercospora arachidicola (Hori) is a serious foliar disease in peanut worldwide, which causes considerable reduction of yield. Identification of resistance genes is important for both conventional and molecular breeding. Few resistance genes have been identified and the mechanism of defense responses to this pathogen remains unknown.

resultsWe detected several genes involved in disease resistance to ELS through transcriptome analysis. Using RNA-seq technology, one hundred thirty-three differentially expressed genes (DEGs) were identified between resistant and susceptible lines. Among these DEGs, coiled coil-nucleotide binding-leucine rich repeat (NLR) type resistance genes were identified as duplicated R genes on the chromosome B2. Peanut phytoalexin deficient 4 (PAD4) regulator of effector-triggered immunity mediated by NLR resistance proteins and polyphenol oxidase (PPO) genes play important roles in early leaf spot resistance. Our study provides the useful information on plant response to C. arachidicola infection in peanut. The results suggest that a few major genes and several factors mediate the resistance to ELS disease, showing the characteristics of quantitative trait in defense responses.

Indexed as

ArachisPlant DiseasesDisease ResistanceGene Expression ProfilingGene Expression Regulation, PlantTranscriptomeDefense responseDifferentially expressed geneGene regulationRNA-seqTranscriptome

Identifiers

PMID32782019
PMCPMC7418390
OpenAlexW3048572395

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.