Evidence map›Paper›PMID 32781615›Full record

ArticleInternational journal of molecular sciences2020

The Chloroplast RNA Binding Protein CP31A Has a Preference for mRNAs Encoding the Subunits of the Chloroplast NAD(P)H Dehydrogenase Complex and Is Required for Their Accumulation.

Benjamin Lenzen, Thilo Rühle, Marie-Kristin Lehniger, Ayako Okuzaki, Mathias Labs, Jose M Muino, Uwe Ohler, Dario Leister, Christian Schmitz-Linneweber

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. The chloroplast RNA-binding protein CP29A supportsProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  2. Review
  3. Overexpression ofFrontiers in plant science · 2024
    Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Benjamin LenzenMolecular Genetics, Humboldt-University Berlin, 10115 Berlin, Germany.ORCID 0000-0002-7881-9513
Thilo RühlePlant Molecular Biology, Department of Biology, Ludwig Maximilian University of Munich, 82152 Munich, Germany.
Marie-Kristin LehnigerMolecular Genetics, Humboldt-University Berlin, 10115 Berlin, Germany.
Ayako OkuzakiMolecular Genetics, Humboldt-University Berlin, 10115 Berlin, Germany.ORCID 0000-0003-1094-5748
Mathias LabsPlant Molecular Biology, Department of Biology, Ludwig Maximilian University of Munich, 82152 Munich, Germany.ORCID 0000-0003-2104-2763
Jose M MuinoComputational Regulatory Genomics, Humboldt-University Berlin/Max Delbrück Centre for Molecular Medicine, 10115 Berlin, Germany.
Uwe OhlerComputational Regulatory Genomics, Humboldt-University Berlin/Max Delbrück Centre for Molecular Medicine, 10115 Berlin, Germany.
Dario LeisterPlant Molecular Biology, Department of Biology, Ludwig Maximilian University of Munich, 82152 Munich, Germany.
Christian Schmitz-LinneweberMolecular Genetics, Humboldt-University Berlin, 10115 Berlin, Germany.ORCID 0000-0002-6125-4253
Humboldt-Universität zu Berlin · DELudwig-Maximilians-Universität München · DEMax Delbrück Center · DE

Funding

Deutsche Forschungsgemeinschaft TRR175 A02Deutsche Forschungsgemeinschaft TRR175 C05Japan Society for the Promotion of Science AO
6 · The paper itself

Abstract

Chloroplast RNA processing requires a large number of nuclear-encoded RNA binding proteins (RBPs) that are imported post-translationally into the organelle. Most of these RBPs are highly specific for one or few target RNAs. By contrast, members of the chloroplast ribonucleoprotein family (cpRNPs) have a wider RNA target range. We here present a quantitative analysis of RNA targets of the cpRNP CP31A using digestion-optimized RNA co-immunoprecipitation with deep sequencing (DO-RIP-seq). This identifies the mRNAs coding for subunits of the chloroplast NAD(P)H dehydrogenase (NDH) complex as main targets for CP31A. We demonstrate using whole-genome gene expression analysis and targeted RNA gel blot hybridization that the

Indexed as

ArabidopsisArabidopsis ProteinsChloroplastsGene Expression Regulation, PlantMutationNADPH DehydrogenaseProtein SubunitsRNA-Binding ProteinsRNA, MessengerArabidopsis ProteinsCP31A protein, ArabidopsisNADPH DehydrogenaseProtein SubunitsRNA-Binding ProteinsRNA, MessengerArabidopsis thalianachloroplastNDH complexorganelleRNA bindingRNA processingRRM

Identifiers

PMID32781615
PMCPMC7460601
OpenAlexW3047225457

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.