Evidence map›Paper›PMID 32780931›Full record

ArticleAngewandte Chemie (International ed. in English)2020

Serial Femtosecond Zero Dose Crystallography Captures a Water-Free Distal Heme Site in a Dye-Decolorising Peroxidase to Reveal a Catalytic Role for an Arginine in Fe

Marina Lučić, Dimitri A Svistunenko, Michael T Wilson, Amanda K Chaplin, Bradley Davy, Ali Ebrahim, Danny Axford, Takehiko Tosha, Hiroshi Sugimoto, Shigeki Owada and 5 more

Abstract read
In one paragraph

Article in Angewandte Chemie (International ed. in English), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
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  15. Serial femtosecond crystallography.Nature reviews. Methods primers · 2022
    Article
  16. Review
  17. Article
  18. Aspartate or arginine? Validated redox state X-ray structures elucidate mechanistic subtleties of FeJournal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2021
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Marina LučićSchool of Life Sciences, University of Essex, Wivenhoe Park, Colchester, Essex, CO4 3SQ, UK.ORCID 0000-0002-8264-8251
Dimitri A SvistunenkoSchool of Life Sciences, University of Essex, Wivenhoe Park, Colchester, Essex, CO4 3SQ, UK.ORCID 0000-0001-8060-2738
Michael T WilsonSchool of Life Sciences, University of Essex, Wivenhoe Park, Colchester, Essex, CO4 3SQ, UK.
Amanda K ChaplinSchool of Life Sciences, University of Essex, Wivenhoe Park, Colchester, Essex, CO4 3SQ, UK.
Bradley DavyDiamond Light Source, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, UK.
Ali EbrahimSchool of Life Sciences, University of Essex, Wivenhoe Park, Colchester, Essex, CO4 3SQ, UK.
Danny AxfordDiamond Light Source, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, UK.
Takehiko ToshaRIKEN Spring-8 Center, 1-1-1 Kouto, Sayo, Hyogo, 679-5148, Japan.ORCID 0000-0002-8971-0759
Hiroshi SugimotoRIKEN Spring-8 Center, 1-1-1 Kouto, Sayo, Hyogo, 679-5148, Japan.ORCID 0000-0002-3140-8362
Shigeki OwadaRIKEN Spring-8 Center, 1-1-1 Kouto, Sayo, Hyogo, 679-5148, Japan.ORCID 0000-0002-1451-7612
Florian S N DworkowskiSwiss Light Source, Paul Scherrer Institute, 5232, Villigen PSI, Switzerland.ORCID 0000-0001-5004-8684
Ivo TewsBiological Sciences, Institute for Life Sciences, University of Southampton, University Road, Southampton, SO17 1BJ, UK.ORCID 0000-0002-4704-1139
Robin L OwenDiamond Light Source, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, UK.
Michael A HoughSchool of Life Sciences, University of Essex, Wivenhoe Park, Colchester, Essex, CO4 3SQ, UK.ORCID 0000-0001-7377-6713
Jonathan A R WorrallSchool of Life Sciences, University of Essex, Wivenhoe Park, Colchester, Essex, CO4 3SQ, UK.ORCID 0000-0002-1863-834X

Funding

Biotechnology and Biological Sciences Research Council BB/R021015/1
6 · The paper itself

Abstract

Obtaining structures of intact redox states of metal centers derived from zero dose X-ray crystallography can advance our mechanistic understanding of metalloenzymes. In dye-decolorising heme peroxidases (DyPs), controversy exists regarding the mechanistic role of the distal heme residues aspartate and arginine in the heterolysis of peroxide to form the catalytic intermediate compound I (Fe

Indexed as

ArginineBiocatalysisColoring AgentsCrystallography, X-RayHemeIron CompoundsModels, MolecularOxidation-ReductionOxygenPeroxidaseStreptomyces lividansArginineColoring AgentsHemeIron CompoundsOxygenPeroxidaseargininebioinorganicheme proteinsperoxidaseX-ray serial femtosecond crystallography

Identifiers

PMID32780931
PMCPMC7756461

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.