Evidence map›Paper›PMID 32780727›Full record

ArticleJCI insight2020

Comprehensive plasma proteomic profiling reveals biomarkers for active tuberculosis.

Diana J Garay-Baquero, Cory H White, Naomi F Walker, Marc Tebruegge, Hannah F Schiff, Cesar Ugarte-Gil, Stephen Morris-Jones, Ben G Marshall, Antigoni Manousopoulou, John Adamson and 7 more

Open access · goldAbstract readMulticenter Study
In one paragraph

Article in JCI insight, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
1.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 63 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 8 institutions in 5 countries.

Diana J Garay-BaqueroSchool of Clinical and Experimental Sciences, Faculty of Medicine, and.
Cory H WhiteSchool of Clinical and Experimental Sciences, Faculty of Medicine, and.
Naomi F WalkerWellcome Centre for Infectious Diseases Research in Africa, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Observatory 7925, South Africa.
Marc TebrueggeDepartment of Paediatric Infectious Diseases & Immunology, Evelina London Children's Hospital, Guy's and St Thomas' NHS Foundation Trust, London, United Kingdom.
Hannah F SchiffSchool of Clinical and Experimental Sciences, Faculty of Medicine, and.
Cesar Ugarte-GilTB Centre and Department of Clinical Research, London School of Hygiene & Tropical Medicine, London, United Kingdom.
Stephen Morris-JonesDepartment of Microbiology, University College London Hospitals NHS Trust, London, United Kingdom.
Ben G MarshallSchool of Clinical and Experimental Sciences, Faculty of Medicine, and.
Antigoni ManousopoulouInstitute for Life Sciences, University of Southampton, Southampton, United Kingdom.
John AdamsonPharmacology Core, Africa Health Research Institute (AHRI), Durban, South Africa.
Andres F VallejoSchool of Clinical and Experimental Sciences, Faculty of Medicine, and.
Magdalena K BieleckaSchool of Clinical and Experimental Sciences, Faculty of Medicine, and.
Robert J WilkinsonWellcome Centre for Infectious Diseases Research in Africa, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Observatory 7925, South Africa.
Liku B TezeraSchool of Clinical and Experimental Sciences, Faculty of Medicine, and.
Christopher H WoelkSchool of Clinical and Experimental Sciences, Faculty of Medicine, and.
Spiros D GarbisInstitute for Life Sciences, University of Southampton, Southampton, United Kingdom.
Paul ElkingtonSchool of Clinical and Experimental Sciences, Faculty of Medicine, and.
California Institute of Technology · USUniversity Hospital Southampton NHS Foundation Trust · GBUniversity of Cape Town · ZAUniversity of Southampton · GBAfrica Health Research Institute · ZAThe University of Melbourne · AUUniversidad Peruana Cayetano Heredia · PEUniversity College London Hospitals NHS Foundation Trust · GB

Funding

Program for Advanced ReseArch Capacities for AIDS in Peru (PARACAS): harnessing implementation science to enhance care and reduce transmission of HIVD43TW009763 · FIC · UNIVERSIDAD PERUANA CAYETANO HEREDIA · PI GOTUZZO, EDUARDO, ZUNT, JOSEPH RAYMOND · 2014 to 2024
$3.2M
Arthritis Research UKBritish Heart FoundationFIC NIH HHS D43 TW009763Medical Research Council MC_PC16059Medical Research Council MR/P023754/1Medical Research Council MR/R001065/1Wellcome Trust 094000
6 · The paper itself

Abstract

BACKGROUNDTuberculosis (TB) kills more people than any other infection, and new diagnostic tests to identify active cases are required. We aimed to discover and verify novel markers for TB in nondepleted plasma.METHODSWe applied an optimized quantitative proteomics discovery methodology based on multidimensional and orthogonal liquid chromatographic separation combined with high-resolution mass spectrometry to study nondepleted plasma of 11 patients with active TB compared with 10 healthy controls. Prioritized candidates were verified in independent UK (n = 118) and South African cohorts (n = 203).RESULTSWe generated the most comprehensive TB plasma proteome to date, profiling 5022 proteins spanning 11 orders-of-magnitude concentration range with diverse biochemical and molecular properties. We analyzed the predominantly low-molecular weight subproteome, identifying 46 proteins with significantly increased and 90 with decreased abundance (peptide FDR ≤ 1%, q ≤ 0.05). Verification was performed for novel candidate biomarkers (CFHR5, ILF2) in 2 independent cohorts. Receiver operating characteristics analyses using a 5-protein panel (CFHR5, LRG1, CRP, LBP, and SAA1) exhibited discriminatory power in distinguishing TB from other respiratory diseases (AUC = 0.81).CONCLUSIONWe report the most comprehensive TB plasma proteome to date, identifying novel markers with verification in 2 independent cohorts, leading to a 5-protein biosignature with potential to improve TB diagnosis. With further development, these biomarkers have potential as a diagnostic triage test.FUNDINGColciencias, Medical Research Council, Innovate UK, NIHR, Academy of Medical Sciences, Program for Advanced Research Capacities for AIDS, Wellcome Centre for Infectious Diseases Research.

Indexed as

BiomarkersCase-Control StudiesFemaleFollow-Up StudiesGene Regulatory NetworksHumansMaleMycobacterium tuberculosisPeruProspective StudiesProteomeROC CurveSouth AfricaTuberculosis, PulmonaryBiomarkersProteomeDiagnosticsInfectious diseaseProteomicsTuberculosis

Identifiers

PMID32780727
PMCPMC7526553
OpenAlexW3048878311

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.