ArticleBMC genomics2020
Genomics-assisted prediction of salt and alkali tolerances and functional marker development in apple rootstocks.
Article in BMC genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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15 citing papers in PubMed, 56 citations in OpenAlex.
- Iron Chlorin e6 Improves Soybean Yield by Maintaining Chlorophyll Stability and Promoting Carbohydrate Accumulation Under Saline-Alkali Stress.Plants (Basel, Switzerland) · 2026Article
- Saline-Alkaline Stress Suppresses Soybean Germination and Early Seedling Growth via Induction of DNA Damage in Roots.Plants (Basel, Switzerland) · 2026Article
- Haplotype-phased 'Ottawa 3' genome unravels differential reaction of apple rootstock roots to mixed viral infection.The Plant journal : for cell and molecular biology · 2026Article
- Integrated BSA-seq and RNA-seq analyses revealFrontiers in plant science · 2026Article
- Phenotypic Characters and Inheritance Tendency of Agronomic Traits in F1 Progeny of Pear.Plants (Basel, Switzerland) · 2025Article
- Synthetic biology and artificial intelligence in crop improvement.Plant communications · 2025Review
- Insights into the molecular mechanisms underlying responses of apple trees to abiotic stresses.Horticulture research · 2023Article
- Transcriptome and Metabolome Analysis Reveals Salt-Tolerance Pathways in the Leaves and Roots of ZM-4 (International journal of molecular sciences · 2023Article
- Quorum sensing improves the plant growth-promoting ability ofFrontiers in microbiology · 2023Article
- A bulked segregant analysis tool for out-crossing species (BSATOS) and QTL-based genomics-assisted prediction of complex traits in apple.Journal of advanced research · 2022Article
- Analysis of the Small Auxin-Up RNA (SAUR) Genes Regulating Root Growth Angle (RGA) in Apple.Genes · 2022Article
- Plant Salinity Stress Response and Nano-Enabled Plant Salt Tolerance.Frontiers in plant science · 2022Review
- Article
- Natural variations in a pectin acetylesterase gene, MdPAE10, contribute to prolonged apple fruit shelf life.The plant genome · 2021Article
- Intricate genetic variation networks control the adventitious root growth angle in apple.BMC genomics · 2020Article
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Authors and funding
11 authors at 1 institution in 1 country.
Funding
Abstract
backgroundSaline, alkaline, and saline-alkaline stress severely affect plant growth and development. The tolerance of plants to these stressors has long been important breeding objectives, especially for woody perennials like apple. The aims of this study were to identify quantitative trait loci (QTLs) and to develop genomics-assisted prediction models for salt, alkali, and salt-alkali tolerance in apple rootstock.
resultsA total of 3258 hybrids derived from the apple rootstock cultivars 'Baleng Crab' (Malus robusta Rehd., tolerant) × 'M9' (M. pumila Mill., sensitive) were used to identify 17, 13, and two QTLs for injury indices of salt, alkali, and salt-alkali stress via bulked segregant analysis. The genotype effects of single nucleotide polymorphism (SNP) markers designed on candidate genes in each QTL interval were estimated. The genomic predicted value of an individual hybrid was calculated by adding the sum of all marker genotype effects to the mean phenotype value of the population. The prediction accuracy was 0.6569, 0.6695, and 0.5834 for injury indices of salt, alkali, and salt-alkali stress, respectively. SNP182G on MdRGLG3, which changes a leucine to an arginine at the vWFA-domain, conferred tolerance to salt, alkali, and salt-alkali stress. SNP761A on MdKCAB, affecting the Kv_beta domain that cooperated with the linked allelic variation SNP11, contributed to salt, alkali, and salt-alkali tolerance in apple rootstock.
conclusionsThe genomics-assisted prediction models can potentially be used in breeding saline, alkaline, and saline-alkaline tolerant apple rootstocks. The QTLs and the functional markers may provide insight for future studies into the genetic variation of plant abiotic stress tolerance.
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