Evidence map›Paper›PMID 32776937›Full record

ArticlePLoS neglected tropical diseases2020

Genomic epidemiology of Campylobacter jejuni associated with asymptomatic pediatric infection in the Peruvian Amazon.

Ben Pascoe, Francesca Schiaffino, Susan Murray, Guillaume Méric, Sion C Bayliss, Matthew D Hitchings, Evangelos Mourkas, Jessica K Calland, Rosa Burga, Pablo Peñataro Yori and 6 more

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 33 citations in OpenAlex.

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  9. Evidence of potentialMicrobial genomics · 2023
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  14. Current perspectives on irritable bowel syndrome: a narrative review.The Journal of international medical research · 2022
    Review
  15. Article
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  18. Article
  19. Whole Resistome Analysis inFrontiers in microbiology · 2021
    Article
  20. Core Genome MLST for Source Attribution ofFrontiers in microbiology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 10 institutions in 5 countries.

Ben PascoeThe Milner Centre for Evolution, Department of Biology and Biochemistry, University of Bath, Bath, United Kingdom.ORCID 0000-0001-6376-5121
Francesca SchiaffinoDepartment of International Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, United States of America.ORCID 0000-0002-5796-5116
Susan MurraySwansea University Medical School, Swansea University, Singleton Park, Swansea, United Kingdom.ORCID 0000-0002-3310-651X
Guillaume MéricThe Milner Centre for Evolution, Department of Biology and Biochemistry, University of Bath, Bath, United Kingdom.ORCID 0000-0001-6288-9958
Sion C BaylissThe Milner Centre for Evolution, Department of Biology and Biochemistry, University of Bath, Bath, United Kingdom.ORCID 0000-0002-5997-2002
Matthew D HitchingsSwansea University Medical School, Swansea University, Singleton Park, Swansea, United Kingdom.
Evangelos MourkasThe Milner Centre for Evolution, Department of Biology and Biochemistry, University of Bath, Bath, United Kingdom.ORCID 0000-0002-7411-4743
Jessica K CallandThe Milner Centre for Evolution, Department of Biology and Biochemistry, University of Bath, Bath, United Kingdom.ORCID 0000-0001-8888-0812
Rosa BurgaBacteriology Department, Naval Medical Research Unit-6 (NAMRU-6), Iquitos, Peru.
Pablo Peñataro YoriThe Division of Infectious Diseases and International Health, University of Virginia, Charlottesville, Virginia, United States of America.
Keith A JolleyDepartment of Zoology, University of Oxford, South Parks Road, Oxford, United Kingdom.ORCID 0000-0002-0751-0287
Kerry K CooperSchool of Animal and Comparative Biomedical Sciences, University of Arizona, Tucson, Arizona, United States of America.ORCID 0000-0003-4541-1324
Craig T ParkerProduce Safety and Microbiology Research Unit, Agricultural Research Service, US Department of Agriculture, Albany, California, United States of America.ORCID 0000-0002-7719-8882
Maribel Paredes OlorteguiAsociacion Benefica Prisma, Loreto, Peru.
Margaret N KosekThe Division of Infectious Diseases and International Health, University of Virginia, Charlottesville, Virginia, United States of America.ORCID 0000-0001-6340-4852
Samuel K SheppardThe Milner Centre for Evolution, Department of Biology and Biochemistry, University of Bath, Bath, United Kingdom.
University of Bath · GBPrisma · PEUniversity of Oxford · GBAgricultural Research Service · USChiang Mai University · THJohns Hopkins University · USSwansea University · GBUnited States Naval Medical Research Unit SOUTH · PEUniversity of Arizona · USUppsala University · SE

Funding

Epidemiology of Shigellosis in the Peruvian AmazonK01TW005717 · FIC · JOHNS HOPKINS UNIVERSITY · PI KOSEK, MARGARET N · 2001 to 2007
$615k
Biotechnology and Biological Sciences Research Council BB/P504750/1FIC NIH HHS K01 TW005717Medical Research Council MR/L015080/1
6 · The paper itself

Abstract

Campylobacter is the leading bacterial cause of gastroenteritis worldwide and its incidence is especially high in low- and middle-income countries (LMIC). Disease epidemiology in LMICs is different compared to high income countries like the USA or in Europe. Children in LMICs commonly have repeated and chronic infections even in the absence of symptoms, which can lead to deficits in early childhood development. In this study, we sequenced and characterized C. jejuni (n = 62) from a longitudinal cohort study of children under the age of 5 with and without diarrheal symptoms, and contextualized them within a global C. jejuni genome collection. Epidemiological differences in disease presentation were reflected in the genomes, specifically by the absence of some of the most common global disease-causing lineages. As in many other countries, poultry-associated strains were likely a major source of human infection but almost half of local disease cases (15 of 31) were attributable to genotypes that are rare outside of Peru. Asymptomatic infection was not limited to a single (or few) human adapted lineages but resulted from phylogenetically divergent strains suggesting an important role for host factors in the cryptic epidemiology of campylobacteriosis in LMICs.

Indexed as

Asymptomatic InfectionsAnimalsCampylobacter InfectionsCampylobacter jejuniChild, PreschoolCohort StudiesDiarrheaGenomicsGenotypeHost-Parasite InteractionsHumansInfantInfant, NewbornLongitudinal StudiesMolecular TypingMultilocus Sequence Typing

Identifiers

PMID32776937
PMCPMC7440661
OpenAlexW3048728347

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.