Evidence map›Paper›PMID 32774073›Full record

ArticleStatistica Sinica2020

Evolutionary State-Space Model and Its Application to Time-Frequency Analysis of Local Field Potentials.

Xu Gao, Weining Shen, Babak Shahbaba, Norbert J Fortin, Hernando Ombao

Abstract read
In one paragraph

Article in Statistica Sinica, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
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  8. Matrix Linear Discriminant Analysis.Technometrics : a journal of statistics for the physical, chemical, and engineering sciences · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Xu GaoDepartment of Statistics, University of California, Irvine, California, U.S.A.
Weining ShenDepartment of Statistics, University of California, Irvine, California, U.S.A.
Babak ShahbabaDepartment of Statistics, University of California, Irvine, California, U.S.A.
Norbert J FortinDepartment of Neurobiology and Behavior, University of California Irvine, Irvine, California, U.S.A.
Hernando OmbaoStatistics Program, King Abdullah University of Science and Technology, Saudi Arabia.

Funding

BAYESIAN MODELING AND DATA INTEGRATION IN INFECTIOUS DISEASE PHYLODYNAMICSR01AI107034 · NIAID · UNIVERSITY OF WASHINGTON · PI MININ, VOLODYMYR · 2013 to 2017
$1.7M
Scalable Bayesian Stochastic Process Models for Neural Data AnalysisR01MH115697 · NIMH · UNIVERSITY OF CALIFORNIA-IRVINE · PI SHAHBABA, BABAK · 2018 to 2022
$1.7M
NIAID NIH HHS R01 AI107034NIMH NIH HHS R01 MH115697
6 · The paper itself

Abstract

We propose an evolutionary state space model (E-SSM) for analyzing high dimensional brain signals whose statistical properties evolve over the course of a non-spatial memory experiment. Under E-SSM, brain signals are modeled as mixtures of components (e.g., AR(2) process) with oscillatory activity at pre-defined frequency bands. To account for the potential non-stationarity of these components (since the brain responses could vary throughout the entire experiment), the parameters are allowed to vary over epochs. Compared with classical approaches such as independent component analysis and filtering, the proposed method accounts for the entire temporal correlation of the components and accommodates non-stationarity. For inference purpose, we propose a novel computational algorithm based upon using Kalman smoother, maximum likelihood and blocked resampling. The E-SSM model is applied to simulation studies and an application to a multi-epoch local field potentials (LFP) signal data collected from a non-spatial (olfactory) sequence memory task study. The results confirm that our method captures the evolution of the power for different components across different phases in the experiment and identifies clusters of electrodes that behave similarly with respect to the decomposition of different sources. These findings suggest that the activity of different electrodes does change over the course of an experiment in practice; treating these epoch recordings as realizations of an identical process could lead to misleading results. In summary, the proposed method underscores the importance of capturing the evolution in brain responses over the study period.

Indexed as

Auto-regressive modelbrain signalsspectral analysisstate-space modelstime-frequency analysis

Identifiers

PMID32774073
PMCPMC7410164

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.