Evidence map›Paper›PMID 32773035›Full record

ArticleeLife2020

The role of the NMD factor UPF3B in olfactory sensory neurons.

Kun Tan, Samantha H Jones, Blue B Lake, Jennifer N Chousal, Eleen Y Shum, Lingjuan Zhang, Song Chen, Abhishek Sohni, Shivam Pandya, Richard L Gallo and 3 more

Abstract read
In one paragraph

Article in eLife, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Kun Tan *Department of Obstetrics, Gynecology, and Reproductive Sciences, School of Medicine University of California, San Diego, San Diego, United States.ORCID 0000-0002-8567-7795
Samantha H Jones *Department of Obstetrics, Gynecology, and Reproductive Sciences, School of Medicine University of California, San Diego, San Diego, United States.
Blue B LakeDepartment of Bioengineering, University of California, San Diego, San Diego, United States.ORCID 0000-0002-8637-9044
Jennifer N ChousalDepartment of Obstetrics, Gynecology, and Reproductive Sciences, School of Medicine University of California, San Diego, San Diego, United States.
Eleen Y ShumDepartment of Obstetrics, Gynecology, and Reproductive Sciences, School of Medicine University of California, San Diego, San Diego, United States.
Lingjuan ZhangDepartment of Dermatology, University of California, San Diego, San Diego, United States.
Song ChenDepartment of Bioengineering, University of California, San Diego, San Diego, United States.ORCID 0000-0001-5286-3084
Abhishek SohniDepartment of Obstetrics, Gynecology, and Reproductive Sciences, School of Medicine University of California, San Diego, San Diego, United States.
Shivam PandyaDepartment of Obstetrics, Gynecology, and Reproductive Sciences, School of Medicine University of California, San Diego, San Diego, United States.
Richard L GalloDepartment of Dermatology, University of California, San Diego, San Diego, United States.
Kun ZhangDepartment of Bioengineering, University of California, San Diego, San Diego, United States.
Heidi Cook-AndersenDepartment of Obstetrics, Gynecology, and Reproductive Sciences, School of Medicine University of California, San Diego, San Diego, United States.
Miles F WilkinsonDepartment of Obstetrics, Gynecology, and Reproductive Sciences, School of Medicine University of California, San Diego, San Diego, United States.ORCID 0000-0002-6416-3058

Funding

UC San Diego Womens Reproductive Health Research ProgramK12HD001259 · NICHD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CYNTHIA GYAMFI-BANNERMAN · 1999 to 2026
$9.1M
The Role of NMD in Embryonic DevelopmentR01HD093846 · NICHD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WILKINSON, MILES FROME · 2018 to 2022
$2.3M
Mechanisms driving the transition from oocyte to embryo: The role of the mRNA decay activator ZFP36L2.R01GM124519 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI COOK-ANDERSEN, HEIDI · 2018 to 2022
$1.7M
NICHD NIH HHS K12 HD001259NICHD NIH HHS R01 HD093846NIGMS NIH HHS R01 GM124519
6 · The paper itself

Abstract

The UPF3B-dependent branch of the nonsense-mediated RNA decay (NMD) pathway is critical for human cognition. Here, we examined the role of UPF3B in the olfactory system. Single-cell RNA-sequencing (scRNA-seq) analysis demonstrated considerable heterogeneity of olfactory sensory neuron (OSN) cell populations in wild-type (WT) mice, and revealed that UPF3B loss influences specific subsets of these cell populations. UPF3B also regulates the expression of a large cadre of antimicrobial genes in OSNs, and promotes the selection of specific olfactory receptor (

Indexed as

AnimalsCells, CulturedMaleMiceMice, KnockoutNonsense Mediated mRNA DecayOlfactory Receptor NeuronsReceptors, OdorantRNA-Binding ProteinsRNA, MessengerRNA-SeqSingle-Cell AnalysisReceptors, OdorantRNA-Binding ProteinsRNA, MessengerUPF3B protein, mouseanti-microbial genesdevelopmental biologymouseneuroscienceNMDolfactory receptorolfactory sensory neuronscRNA-seqUpf3b

Identifiers

PMID32773035
PMCPMC7452722

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.