ArticleThe Plant journal : for cell and molecular biology2020
Soybean BARCSoySNP6K: An assay for soybean genetics and breeding research.
Article in The Plant journal : for cell and molecular biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
57 citing papers in PubMed, 103 citations in OpenAlex.
- Suitability and effectiveness of marker-assisted selection in soybeans under Asian soybean rust pressure.Molecular breeding : new strategies in plant improvement · 2026Article
- Quantitative trait loci analysis identifying novel genomic regions for off-target dicamba tolerance in soybean [Glycine max (L.) Merr.].BMC plant biology · 2026Article
- Genome-wide signatures of selection and genetic diversity reveal the impact of modern breeding on Brazilian soybean.Molecular breeding : new strategies in plant improvement · 2026Article
- Genome-wide identification of SNPs related to resistance to soybean stem canker caused by Diaporthe caulivora.BMC plant biology · 2026Article
- Genetic mapping of novel QTL for seed protein stability in food-grade soybean (Glycine max).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Dissecting seed composition QTL from wild soybean: fine-mapping, candidate gene identification, and evaluation of introgression effects on agronomic performance.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Characterization of a G. max × G. soja nested association mapping population and identification of loci controlling seed composition traits from wild soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- QTL mapping and whole-genome sequencing analysis for novel genetic resources associated with sucrose content in soybean [Glycine max (L.) Merr.].TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Integration of Genetic and Imaging Data to Detect QTL for Root Traits in Interspecific Soybean Populations.International journal of molecular sciences · 2025Article
- Article
- Allele-tagged TaqManMolecular biology reports · 2024Article
- Soybean genomics research community strategic plan: A vision for 2024-2028.The plant genome · 2024Article
- Development and implementation of nested single-nucleotide polymorphism (SNP) assays for breeding and genetic research applications.The plant genome · 2024Article
- Identification of Quantitative Trait Loci Controlling Root Morphological Traits in an Interspecific Soybean Population Using 2D Imagery Data.International journal of molecular sciences · 2024Article
- Genetic mapping reveals the complex genetic architecture controlling slow canopy wilting in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Comparison ofFrontiers in plant science · 2024Article
- Glycine soja, PI424025, is a valuable genetic resource to improve soybean seed-protein content and composition.PloS one · 2024Article
- Soybean genetics, genomics, and breeding for improving nutritional value and reducing antinutritional traits in food and feed.The plant genome · 2023Review
- Genomic analysis and characterization of new loci associated with seed protein and oil content in soybeans.The plant genome · 2023Article
- Genomic selection of soybean (Glycine max) for genetic improvement of yield and seed composition in a breeding context.The plant genome · 2023Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
12 authors at 5 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The limited number of recombinant events in recombinant inbred lines suggests that for a biparental population with a limited number of recombinant inbred lines, it is unnecessary to genotype the lines with many markers. For genomic prediction and selection, previous studies have demonstrated that only 1000-2000 genome-wide common markers across all lines/accessions are needed to reach maximum efficiency of genomic prediction in populations. Evaluation of too many markers will not only increase the cost but also generate redundant information. We developed a soybean (Glycine max) assay, BARCSoySNP6K, containing 6000 markers, which were carefully chosen from the SoySNP50K assay based on their position in the soybean genome and haplotype block, polymorphism among accessions and genotyping quality. The assay includes 5000 single nucleotide polymorphisms (SNPs) from euchromatic and 1000 from heterochromatic regions. The percentage of SNPs with minor allele frequency >0.10 was 95% and 91% in the euchromatic and heterochromatic regions, respectively. Analysis of progeny from two large families genotyped with SoySNP50K versus BARCSoySNP6K showed that the position of the common markers and number of unique bins along linkage maps were consistent based on the SNPs genotyped with the two assays; however, the rate of redundant markers was dramatically reduced with the BARCSoySNP6K. The BARCSoySNP6K assay is proven as an excellent tool for detecting quantitative trait loci, genomic selection and assessing genetic relationships. The assay is commercialized by Illumina Inc. and being used by soybean breeders and geneticists and the list of SNPs in the assay is an ideal resource for SNP genotyping by targeted amplicon sequencing.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.