Evidence map›Paper›PMID 32771180›Full record

ArticleBiological psychiatry. Cognitive neuroscience and neuroimaging2020

Addressing Inaccurate Nosology in Mental Health: A Multilabel Data Cleansing Approach for Detecting Label Noise From Structural Magnetic Resonance Imaging Data in Mood and Psychosis Disorders.

Hooman Rokham, Godfrey Pearlson, Anees Abrol, Haleh Falakshahi, Sergey Plis, Vince D Calhoun

Open access · greenAbstract read
In one paragraph

Article in Biological psychiatry. Cognitive neuroscience and neuroimaging, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
1.6field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 23 citations in OpenAlex.

  1. Pooled it
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  9. The overlap across psychotic disorders: A functional network connectivity analysis.International journal of psychophysiology : official journal of the International Organization of Psychophysiology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Hooman RokhamDepartment of Electrical and Computer Engineering, Georgia Institute of Technology, Atlanta, Georgia; Tri-institutional Center of Translational Research in Neuroimaging and Data Science (TReNDS), Georgia State University, Georgia Institute of Technology, and Emory University, Atlanta, Georgia. Electronic address: hrokham@gatech.edu.
Godfrey PearlsonDepartment of Psychiatry, Yale University, New Haven, Connecticut; Department of Neuroscience, Yale University, New Haven, Connecticut; Olin Neuropsychiatry Research Center, Hartford Hospital, Hartford, Connecticut.
Anees AbrolTri-institutional Center of Translational Research in Neuroimaging and Data Science (TReNDS), Georgia State University, Georgia Institute of Technology, and Emory University, Atlanta, Georgia; Department of Computer Science, Georgia State University, Atlanta, Georgia.
Haleh FalakshahiDepartment of Electrical and Computer Engineering, Georgia Institute of Technology, Atlanta, Georgia; Tri-institutional Center of Translational Research in Neuroimaging and Data Science (TReNDS), Georgia State University, Georgia Institute of Technology, and Emory University, Atlanta, Georgia.
Sergey PlisTri-institutional Center of Translational Research in Neuroimaging and Data Science (TReNDS), Georgia State University, Georgia Institute of Technology, and Emory University, Atlanta, Georgia; Department of Computer Science, Georgia State University, Atlanta, Georgia.
Vince D CalhounDepartment of Electrical and Computer Engineering, Georgia Institute of Technology, Atlanta, Georgia; Tri-institutional Center of Translational Research in Neuroimaging and Data Science (TReNDS), Georgia State University, Georgia Institute of Technology, and Emory University, Atlanta, Georgia; Department of Computer Science, Georgia State University, Atlanta, Georgia; Department of Psychology, Georgia State University, Atlanta, Georgia; Department of Psychiatry, Yale University, New Haven, Connecticut.
Georgia Institute of Technology · USHartford Hospital · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Trans-omics Integration of Multi-omics Studies for OsteoporosisU19AG055373 · NIA · TULANE UNIVERSITY OF LOUISIANA · PI HONG-WEN DENG · 2017 to 2026
$24.3M
Multivariate methods for identifying multitask/multimodal brain imaging biomarkersR01EB006841 · NIBIB · THE MIND RESEARCH NETWORK · PI VINCE D CALHOUN, Sergey Plis · 2007 to 2026
$9.8M
Mining the Genomewide Scan: Genetic Profiles of Structural Loss in Schizophrenia: AD/ADRD supplementR01MH094524 · NIMH · THE MIND RESEARCH NETWORK · PI CALHOUN, VINCE D, TURNER, JESS · 2012 to 2021
$6.3M
Informed Data-Driven Fusion of Behavior, Brain Function, and GenesR01EB005846 · NIBIB · THE MIND RESEARCH NETWORK · PI CALHOUN, VINCE D · 2005 to 2016
$5.5M
Male/Female differences in psychosis and mood disorders:Dynamic imaging-genomic models for characterizing and predicting psychosis and mood dR01MH118695 · NIMH · GEORGIA STATE UNIVERSITY · PI ADALI, TULAY, CALHOUN, VINCE D · 2019 to 2023
$3.8M
Unified multivariate data-driven solutions for static and dynamic brain connectivityR01EB020407 · NIBIB · THE MIND RESEARCH NETWORK · PI ADALI, TULAY, CALHOUN, VINCE D · 2015 to 2018
$2.7M
Integration of brain imaging with genomic and epigenomic dataR01MH104680 · NIMH · TULANE UNIVERSITY OF LOUISIANA · PI CALHOUN, VINCE D, DENG, HONG-WEN · 2014 to 2017
$2.1M
NCATS NIH HHS UL1 TR001863NIA NIH HHS U19 AG055373NIBIB NIH HHS R01 EB005846NIBIB NIH HHS R01 EB006841NIBIB NIH HHS R01 EB020407NIMH NIH HHS R01 MH094524NIMH NIH HHS R01 MH104680NIMH NIH HHS R01 MH118695
6 · The paper itself

Abstract

backgroundMental health diagnostic approaches are seeking to identify biological markers to work alongside advanced machine learning approaches. It is difficult to identify a biological marker of disease when the traditional diagnostic labels themselves are not necessarily valid.

methodsWe worked with T1 structural magnetic resonance imaging data collected from 1493 individuals comprising healthy control subjects, patients with psychosis, and their unaffected first-degree relatives. Specifically, the dataset included 176 bipolar disorder probands, 134 schizoaffective disorder probands, 240 schizophrenia probands, 362 control subjects, and 581 patient relatives. We assumed that there might be noise in the diagnostic labeling process. We detected label noise by classifying the data multiple times using a support vector machine classifier, and then we flagged those individuals in which all classifiers unanimously mislabeled those subjects. Next, we assigned a new diagnostic label to these individuals, based on the biological data (magnetic resonance imaging), using an iterative data cleansing approach.

resultsSimulation results showed that our method was highly accurate in identifying label noise. Both diagnostic and biotype categories showed about 65% and 63% of noisy labels, respectively, with the largest amount of relabeling occurring between the healthy control subjects and individuals with bipolar disorder and schizophrenia as well as in unaffected close relatives. The extraction of imaging features highlighted regional brain changes associated with each group.

conclusionsThis approach represents an initial step toward developing strategies that need not assume that existing mental health diagnostic categories are always valid but rather allows us to leverage this information while also acknowledging that there are misassignments.

Indexed as

Bipolar DisorderPsychotic DisordersSchizophreniaHumansMagnetic Resonance ImagingMental HealthData cleansingDeep learningLabel noiseMachine learningPsychosis disordersStructural MRI

Identifiers

PMID32771180
PMCPMC7760893
OpenAlexW3029733682

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.