Evidence map›Paper›PMID 32771001›Full record

ArticleBMC veterinary research2020

Identification of Newcastle disease virus subgenotype VII.2 in wild birds in Turkey.

Nuri Turan, Cemal Ozsemir, Aysun Yilmaz, Utku Y Cizmecigil, Ozge Aydin, Ozge Erdogan Bamac, Aydin Gurel, Ahmet Kutukcu, Kubra Ozsemir, H Emre Tali and 8 more

Open access · goldAbstract read
In one paragraph

Article in BMC veterinary research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 3 countries.

Nuri TuranDepartment of Virology, Veterinary Faculty, University of Istanbul-Cerrahpasa, Avcilar, Istanbul, Turkey.
Cemal OzsemirDepartment of Virology, Veterinary Faculty, University of Istanbul-Cerrahpasa, Avcilar, Istanbul, Turkey.
Aysun YilmazDepartment of Virology, Veterinary Faculty, University of Istanbul-Cerrahpasa, Avcilar, Istanbul, Turkey.
Utku Y CizmecigilDepartment of Virology, Veterinary Faculty, University of Istanbul-Cerrahpasa, Avcilar, Istanbul, Turkey.
Ozge AydinDepartment of Virology, Veterinary Faculty, University of Istanbul-Cerrahpasa, Avcilar, Istanbul, Turkey.
Ozge Erdogan BamacDepartment of Pathology, Veterinary Faculty, University of Istanbul-Cerrahpasa, Avcilar, Istanbul, Turkey.
Aydin GurelDepartment of Pathology, Veterinary Faculty, University of Istanbul-Cerrahpasa, Avcilar, Istanbul, Turkey.
Ahmet KutukcuDepartment of Virology, Veterinary Faculty, University of Istanbul-Cerrahpasa, Avcilar, Istanbul, Turkey.
Kubra OzsemirDepartment of Wild Animals and Ecology, Veterinary Faculty, University of Istanbul-Cerrahpasa, Avcilar, Istanbul, Turkey.
H Emre TaliDepartment of Virology, Veterinary Faculty, University of Istanbul-Cerrahpasa, Avcilar, Istanbul, Turkey.
Besim H TaliDepartment of Virology, Veterinary Faculty, University of Istanbul-Cerrahpasa, Avcilar, Istanbul, Turkey.
Semaha G YilmazDepartment of Virology, Veterinary Faculty, University of Istanbul-Cerrahpasa, Avcilar, Istanbul, Turkey.
Mehmetcan YaramanogluDepartment of Virology, Veterinary Faculty, University of Istanbul-Cerrahpasa, Avcilar, Istanbul, Turkey.
B Kaan TekelioğluDepartment of Virology, Veterinary Faculty, University of Cukurova, Ceyhan, Istanbul, Turkey.
Serhat OzsoyDepartment of Wild Animals and Ecology, Veterinary Faculty, University of Istanbul-Cerrahpasa, Avcilar, Istanbul, Turkey.
Juergen A RichtDepartment of Diagnostic Medicine and Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan, USA.
Munir IqbalThe Pirbright Institute, Ash Road, Pirbright, Woking, GU24 0NF, UK.
Huseyin YilmazDepartment of Virology, Veterinary Faculty, University of Istanbul-Cerrahpasa, Avcilar, Istanbul, Turkey. hyilmaz@istanbul.edu.tr.ORCID http://orcid.org/0000-0002-7897-2358
Istanbul University · TRCukurova University · TRKansas State University · USThe Pirbright Institute · GB

Funding

Istanbul University-Cerrahpasa BAP-Project No: 21489
6 · The paper itself

Abstract

backgroundNewcastle disease viruses (NDVs) can spread across continents via migratory birds. Hence, we investigated the frequency of NDV in both non-migratory and birds migrating on the Black Sea-Mediterranean flyway, in Istanbul, Turkey. Birds were trapped using nets placed around the Kucukcekmece lake Avcilar, Istanbul, in spring seasons of 2016 and 2018. In total, 297 birds belonging to 42 different species were trapped, categorized according to species and sex, and flocked oropharyngeal swabs were collected. In addition, flocked swabs were also collected from 115 mallards caught by hunters around Edirne and from 207 birds which had been treated in the Veterinary Faculty of Istanbul university-Cerrahpasa. Tissue samples were taken from dead wild birds brought by public to Veterinary Faculty. A total of 619 flocked oropharyngeal swabs were pooled into 206 samples. RNA was extracted from swabs and tissue samples. Real-time RT-PCR prob. assay was used to detect NDV-RNA in samples.

resultsThere was no amplification in real time RT-PCR in samples taken from wild birds caught by traps. However, amplification of NDV-F gene was observed in oropharyngeal swabs taken from 2 waterfowls (Common Moorhen and Mallard), and in tissue samples taken from 2 little owls and 1 common kestrel. Sequencing and phylogenetic analyses of these 5 samples for NDV-F gene showed great similarity with NDV subgenotype VII.2 viruses. Analysis also showed that there is a high similarity with the F gene sequences previously reported from Turkey in 2012 and as well as the sequences from neighbouring countries Bulgaria and Georgia and geographically close country such as Pakistan. Although the strains found in this study are closely related, there is a relatively small degree of molecular divergence within 543 bp of F gene of the Turkish NDV isolate and strains detected in Israel, Pakistan, Iran, United Arab Emirates and Belgium.

conclusionsOur findings revealed the presence of subgenotype VII.2 of NDVs in wild birds in north west of Turkey and demonstrated some degree of molecular evolution when compared to the earlier NDV-VII.2 isolate in Turkey.

Indexed as

AnimalsAnimals, WildBirdsFemaleMaleNewcastle DiseaseNewcastle disease virusPhylogenyReal-Time Polymerase Chain ReactionRNA, ViralTurkeyRNA, ViralNewcastle disease virusPhylogeneticReal time RT-PCRTurkeyWild birds

Identifiers

PMID32771001
PMCPMC7414739
OpenAlexW3048112019

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.