Evidence map›Paper›PMID 32769208›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Genesis and spread of multiple reassortants during the 2016/2017 H5 avian influenza epidemic in Eurasia.

Samantha J Lycett, Anne Pohlmann, Christoph Staubach, Valentina Caliendo, Mark Woolhouse, Martin Beer, Thijs Kuiken, Global Consortium for H5N8 and Related Influenza Viruses

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 84 papers.

0numbers the graph read from it
0cells of the map it votes in
84citing papers in PubMed
9.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

84 citing papers in PubMed, 115 citations in OpenAlex.

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  20. Novel (d)PCR assays for influenza A(H5Nx) viruses clade 2.3.4.4b surveillance.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2025
    Article

24 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 4 countries.

Samantha J LycettThe Roslin Institute, University of Edinburgh, EH25 9RG Edinburgh, United Kingdom.ORCID 0000-0003-3159-596X
Anne PohlmannInstitute of Diagnostic Virology, Friedrich Loeffler Institut, D-17493 Greifswald-Insel Riems, Germany.ORCID 0000-0002-5318-665X
Christoph StaubachInstitute of Epidemiology, Friedrich Loeffler Institut, D-17493 Greifswald-Insel Riems, Germany.
Valentina CaliendoDepartment of Viroscience, Erasmus University Medical Center, 3015 NC Rotterdam, the Netherlands.
Mark WoolhouseUsher Institute, University of Edinburgh, EH9 3FL Edinburgh, United Kingdom.
Martin BeerInstitute of Diagnostic Virology, Friedrich Loeffler Institut, D-17493 Greifswald-Insel Riems, Germany.
Thijs KuikenDepartment of Viroscience, Erasmus University Medical Center, 3015 NC Rotterdam, the Netherlands; t.kuiken@erasmusmc.nl.ORCID 0000-0001-5501-9049
Global Consortium for H5N8 and Related Influenza Viruses
Friedrich-Loeffler-Institut · DEErasmus MC · NLNational Influenza Center · MNRoslin Institute · GB

Funding

Biotechnology and Biological Sciences Research Council BBS/E/D/20002173
6 · The paper itself

Abstract

Highly pathogenic avian influenza (HPAI) viruses of the H5 A/goose/Guangdong/1/96 lineage can cause severe disease in poultry and wild birds, and occasionally in humans. In recent years, H5 HPAI viruses of this lineage infecting poultry in Asia have spilled over into wild birds and spread via bird migration to countries in Europe, Africa, and North America. In 2016/2017, this spillover resulted in the largest HPAI epidemic on record in Europe and was associated with an unusually high frequency of reassortments between H5 HPAI viruses and cocirculating low-pathogenic avian influenza viruses. Here, we show that the seven main H5 reassortant viruses had various combinations of gene segments 1, 2, 3, 5, and 6. Using detailed time-resolved phylogenetic analysis, most of these gene segments likely originated from wild birds and at dates and locations that corresponded to their hosts' migratory cycles. However, some gene segments in two reassortant viruses likely originated from domestic anseriforms, either in spring 2016 in east China or in autumn 2016 in central Europe. Our results demonstrate that, in addition to domestic anseriforms in Asia, both migratory wild birds and domestic anseriforms in Europe are relevant sources of gene segments for recent reassortant H5 HPAI viruses. The ease with which these H5 HPAI viruses reassort, in combination with repeated spillovers of H5 HPAI viruses into wild birds, increases the risk of emergence of a reassortant virus that persists in wild bird populations yet remains highly pathogenic for poultry.

Indexed as

AnimalsAnimals, WildAsiaBirdsEpidemicsEuropeInfluenza A Virus, H5N1 SubtypeInfluenza in BirdsPhylogenyPoultryReassortant Virusesemerging infectious diseaseshighly pathogenic avian influenzaphylogenetic analysispoultrywild birds

Identifiers

PMID32769208
PMCPMC7456104
OpenAlexW3048266542

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.