Evidence map›Paper›PMID 32768646›Full record

ArticleBioorganic & medicinal chemistry letters2020

Integrating DNA-encoded chemical libraries with virtual combinatorial library screening: Optimizing a PARP10 inhibitor.

Mike Lemke, Hannah Ravenscroft, Nicole J Rueb, Dmitri Kireev, Dana Ferraris, Raphael M Franzini

Open access · greenAbstract read
In one paragraph

Article in Bioorganic & medicinal chemistry letters, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.7field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Small-molecule discovery through DNA-encoded libraries.Nature reviews. Drug discovery · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Mike LemkeDepartment of Chemistry, McDaniel College, 2 College Hill, Westminster, MD 21157, USA.
Hannah RavenscroftDepartment of Chemistry, McDaniel College, 2 College Hill, Westminster, MD 21157, USA.
Nicole J RuebDepartment of Medicinal Chemistry, Skaggs College of Pharmacy, University of Utah, 30 S 2000 E, Salt Lake City, UT 84112, USA.
Dmitri KireevCenter for Integrative Chemical Biology and Drug Discovery, UNC Eshelman School of Pharmacy, 301 Pharmacy Lane, University of North Carolina, Chapel Hill, NC 27599, USA. Electronic address: Dmitri.kireev@unc.edu.
Dana FerrarisDepartment of Chemistry, McDaniel College, 2 College Hill, Westminster, MD 21157, USA. Electronic address: Dferraris@mcdaniel.edu.
Raphael M FranziniDepartment of Medicinal Chemistry, Skaggs College of Pharmacy, University of Utah, 30 S 2000 E, Salt Lake City, UT 84112, USA. Electronic address: Raphael.franzini@utah.edu.
McDaniel College · USUniversity of Utah · USUniversity of North Carolina at Chapel Hill · US

Funding

MERTK/AXL dual inhibitors provide novel treatment for cancer by targeting tumor cells and activating anti-tumor immunityR01CA249190 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI GRAHAM, DOUGLAS K, WANG, XIAODONG · 2020 to 2024
$2.5M
Computational and experimental insights into the structure and dynamics of heterochromatinR01GM132299 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HATHAWAY, NATHANIEL A., KIREEV, DMITRI · 2020 to 2023
$1.2M
NCI NIH HHS R01 CA249190NIGMS NIH HHS R01 GM132299
6 · The paper itself

Abstract

Two critical steps in drug development are 1) the discovery of molecules that have the desired effects on a target, and 2) the optimization of such molecules into lead compounds with the required potency and pharmacokinetic properties for translation. DNA-encoded chemical libraries (DECLs) can nowadays yield hits with unprecedented ease, and lead-optimization is becoming the limiting step. Here we integrate DECL screening with structure-based computational methods to streamline the development of lead compounds. The presented workflow consists of enumerating a virtual combinatorial library (VCL) derived from a DECL screening hit and using computational binding prediction to identify molecules with enhanced properties relative to the original DECL hit. As proof-of-concept demonstration, we applied this approach to identify an inhibitor of PARP10 that is more potent and druglike than the original DECL screening hit.

Indexed as

Combinatorial Chemistry TechniquesDNADrug DiscoveryDrug Evaluation, PreclinicalEnzyme AssaysHumansMolecular Docking SimulationPoly(ADP-ribose) PolymerasesProof of Concept StudyProtein BindingProto-Oncogene ProteinsSmall Molecule LibrariesDNAPARP10 protein, humanPoly(ADP-ribose) PolymerasesProto-Oncogene ProteinsSmall Molecule LibrariesComputer-guided drug discoveryDNA-encoded chemical librariesHit-to-lead developmentPoly-(ADP-ribose) polymeraseVirtual combinatorial libraries

Identifiers

PMID32768646
PMCPMC7530011
OpenAlexW3047285308

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.