Evidence map›Paper›PMID 32768421›Full record

ArticleDevelopmental cell2020

CRISPR-Cas13d Induces Efficient mRNA Knockdown in Animal Embryos.

Gopal Kushawah, Luis Hernandez-Huertas, Joaquin Abugattas-Nuñez Del Prado, Juan R Martinez-Morales, Michelle L DeVore, Huzaifa Hassan, Ismael Moreno-Sanchez, Laura Tomas-Gallardo, Alejandro Diaz-Moscoso, Dahiana E Monges and 11 more

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Article in Developmental cell, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 135 papers.

0numbers the graph read from it
0cells of the map it votes in
135citing papers in PubMed
10.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

135 citing papers in PubMed, 236 citations in OpenAlex.

  1. Article
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  6. Programmable RNA NAdvanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
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  9. Review
  10. Versatile CRISPR-Cas Tools for Gene Regulation in Zebrafish via an Enhanced Q Binary System.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
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  15. Functional Testing of Microproteins in a Vertebrate Model of Development.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
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  18. Review
  19. Article
  20. Article

75 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors at 4 institutions in 3 countries.

Gopal KushawahStowers Institute for Medical Research, 1000 E 50th Street, Kansas City, MO 64110, USA.
Luis Hernandez-HuertasAndalusian Center for Developmental Biology (CABD), Pablo de Olavide University/CSIC/Junta de Andalucía, Ctra. Utrera Km.1, 41013 Seville, Spain; Department of Molecular Biology and Biochemical Engineer, Pablo de Olavide University, Ctra. Utrera Km.1, 41013 Seville, Spain.
Joaquin Abugattas-Nuñez Del PradoAndalusian Center for Developmental Biology (CABD), Pablo de Olavide University/CSIC/Junta de Andalucía, Ctra. Utrera Km.1, 41013 Seville, Spain; Department of Molecular Biology and Biochemical Engineer, Pablo de Olavide University, Ctra. Utrera Km.1, 41013 Seville, Spain; Department of Biology, Universidad Peruana Cayetano Heredia, Av. Honorio Delgado 430, Lima 15102, Perú.
Juan R Martinez-MoralesAndalusian Center for Developmental Biology (CABD), Pablo de Olavide University/CSIC/Junta de Andalucía, Ctra. Utrera Km.1, 41013 Seville, Spain.
Michelle L DeVoreStowers Institute for Medical Research, 1000 E 50th Street, Kansas City, MO 64110, USA.
Huzaifa HassanStowers Institute for Medical Research, 1000 E 50th Street, Kansas City, MO 64110, USA.
Ismael Moreno-SanchezAndalusian Center for Developmental Biology (CABD), Pablo de Olavide University/CSIC/Junta de Andalucía, Ctra. Utrera Km.1, 41013 Seville, Spain; Department of Molecular Biology and Biochemical Engineer, Pablo de Olavide University, Ctra. Utrera Km.1, 41013 Seville, Spain.
Laura Tomas-GallardoProteomics and Biochemistry Unit, Andalusian Center for Developmental Biology/Pablo de Olavide University/CSIC/Junta de Andalucía, Ctra. Utrera Km.1, 41013 Seville, Spain.
Alejandro Diaz-MoscosoProteomics and Biochemistry Unit, Andalusian Center for Developmental Biology/Pablo de Olavide University/CSIC/Junta de Andalucía, Ctra. Utrera Km.1, 41013 Seville, Spain.
Dahiana E MongesAndalusian Center for Developmental Biology (CABD), Pablo de Olavide University/CSIC/Junta de Andalucía, Ctra. Utrera Km.1, 41013 Seville, Spain; Department of Molecular Biology and Biochemical Engineer, Pablo de Olavide University, Ctra. Utrera Km.1, 41013 Seville, Spain.
Javier R GuelfoAndalusian Center for Developmental Biology (CABD), Pablo de Olavide University/CSIC/Junta de Andalucía, Ctra. Utrera Km.1, 41013 Seville, Spain; Department of Molecular Biology and Biochemical Engineer, Pablo de Olavide University, Ctra. Utrera Km.1, 41013 Seville, Spain.
William C TheuneDepartment of Biology and Environmental Science, University of New Haven, West Haven, CT 06516, USA.
Emry O BrannanDepartment of Biology and Environmental Science, University of New Haven, West Haven, CT 06516, USA.
Wei WangStowers Institute for Medical Research, 1000 E 50th Street, Kansas City, MO 64110, USA.
Timothy J CorbinStowers Institute for Medical Research, 1000 E 50th Street, Kansas City, MO 64110, USA.
Andrea M MoranStowers Institute for Medical Research, 1000 E 50th Street, Kansas City, MO 64110, USA.
Alejandro Sánchez AlvaradoStowers Institute for Medical Research, 1000 E 50th Street, Kansas City, MO 64110, USA; Howard Hughes Medical Institute, Stowers Institute for Medical Research, Kansas City, MO, USA.
Edward Málaga-TrilloDepartment of Biology, Universidad Peruana Cayetano Heredia, Av. Honorio Delgado 430, Lima 15102, Perú.
Carter M TakacsDepartment of Biology and Environmental Science, University of New Haven, West Haven, CT 06516, USA.
Ariel A BazziniStowers Institute for Medical Research, 1000 E 50th Street, Kansas City, MO 64110, USA; Department of Molecular and Integrative Physiology, University of Kansas Medical Center, 3901 Rainbow Blvd, Kansas City, KS 66160, USA. Electronic address: arb@stowers.org.
Miguel A Moreno-MateosAndalusian Center for Developmental Biology (CABD), Pablo de Olavide University/CSIC/Junta de Andalucía, Ctra. Utrera Km.1, 41013 Seville, Spain; Department of Molecular Biology and Biochemical Engineer, Pablo de Olavide University, Ctra. Utrera Km.1, 41013 Seville, Spain. Electronic address: mamormat@upo.es.
Centro Andaluz de Biología del Desarrollo · ESStowers Institute for Medical Research · USUniversity of New Haven · USUniversidad Peruana Cayetano Heredia · PE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Early embryonic development is driven exclusively by maternal gene products deposited into the oocyte. Although critical in establishing early developmental programs, maternal gene functions have remained elusive due to a paucity of techniques for their systematic disruption and assessment. CRISPR-Cas13 systems have recently been employed to degrade RNA in yeast, plants, and mammalian cell lines. However, no systematic study of the potential of Cas13 has been carried out in an animal system. Here, we show that CRISPR-RfxCas13d (CasRx) is an effective and precise system to deplete specific mRNA transcripts in zebrafish embryos. We demonstrate that zygotically expressed and maternally provided transcripts are efficiently targeted, resulting in a 76% average decrease in transcript levels and recapitulation of well-known embryonic phenotypes. Moreover, we show that this system can be used in medaka, killifish, and mouse embryos. Altogether, our results demonstrate that CRISPR-RfxCas13d is an efficient knockdown platform to interrogate gene function in animal embryos.

Indexed as

Gene EditingAnimalsClustered Regularly Interspaced Short Palindromic RepeatsCRISPR-Cas SystemsGene Expression Regulation, DevelopmentalHEK293 CellsHumansRNA InterferenceRNA, MessengerRNA, MessengerCas13dCRISPR-Cas13early developmentembryogenesiskillifishknockdownmedakaMZTRNA targetingzebrafish

Identifiers

PMID32768421
OpenAlexW3048341121

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.