Evidence map›Paper›PMID 32766692›Full record

ReviewJournal of the American Medical Informatics Association : JAMIA2020

A review of auditing techniques for the Unified Medical Language System.

Ling Zheng, Zhe He, Duo Wei, Vipina Keloth, Jung-Wei Fan, Luke Lindemann, Xinxin Zhu, James J Cimino, Yehoshua Perl

Abstract readReview
In one paragraph

Review in Journal of the American Medical Informatics Association : JAMIA, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. A GCN-based approach to uncover misaligned synonymous terms in the UMLS Metathesaurus.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2023
    Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Ling ZhengDepartment of Computer Science and Software Engineering, Monmouth University, West Long Branch, New Jersey, USA.
Zhe HeSchool of Information, Florida State University, Tallahassee, Florida, USA.
Duo WeiSchool of Business, Stockton University, Galloway, New Jersey, USA.
Vipina KelothDepartment of Computer Science, New Jersey Institute of Technology, Newark, New Jersey, USA.
Jung-Wei FanDivision of Digital Health Sciences, Department of Health Sciences Research, Mayo Clinic, Rochester, Minnesota, USA.
Luke LindemannCenter for Biomedical Data Science, Yale School of Medicine, New Haven, Connecticut, USA.
Xinxin ZhuCenter for Biomedical Data Science, Yale School of Medicine, New Haven, Connecticut, USA.
James J CiminoInformatics Institute, University of Alabama at Birmingham, Birmingham, Alabama, USA.
Yehoshua PerlDepartment of Computer Science, New Jersey Institute of Technology, Newark, New Jersey, USA.

Funding

Using social networks to map and evaluate team science across CTSA hubsUL1TR001427 · NCATS · UNIVERSITY OF FLORIDA · PI MITCHELL, DUANE A. · 2015 to 2024
$37.2M
UAB Center for Clinical and Translational Science (CCTS)UL1TR001417 · NCATS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KIMBERLY, ROBERT P. · 2015 to 2018
$31.4M
The Adherence Promotion with Person-centered Technology (APPT) Project: Promoting Adherence to Enhance the Early Detection and Treatment of Cognitive DeclineR01AG064529 · NIA · FLORIDA STATE UNIVERSITY · PI BOOT, WALTER RICHARD · 2019 to 2023
$3.2M
Systematic Analysis of Clinical Study Generalizability Assessment Methods with InformaticsR21AG061431 · NIA · FLORIDA STATE UNIVERSITY · PI BIAN, JIANG, HE, ZHE · 2019 to 2020
$793k
NCATS NIH HHS UL1 TR001417NCATS NIH HHS UL1 TR001427NIA NIH HHS R01 AG064529NIA NIH HHS R21 AG061431
6 · The paper itself

Abstract

objectiveThe study sought to describe the literature related to the development of methods for auditing the Unified Medical Language System (UMLS), with particular attention to identifying errors and inconsistencies of attributes of the concepts in the UMLS Metathesaurus. MATERIALS AND

methodsWe applied the PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analyses) approach by searching the MEDLINE database and Google Scholar for studies referencing the UMLS and any of several terms related to auditing, error detection, and quality assurance. A qualitative analysis and summarization of articles that met inclusion criteria were performed.

resultsEighty-three studies were reviewed in detail. We first categorized techniques based on various aspects including concepts, concept names, and synonymy (n = 37), semantic type assignments (n = 36), hierarchical relationships (n = 24), lateral relationships (n = 12), ontology enrichment (n = 8), and ontology alignment (n = 18). We also categorized the methods according to their level of automation (ie, automated systematic, automated heuristic, or manual) and the type of knowledge used (ie, intrinsic or extrinsic knowledge).

conclusionsThis study is a comprehensive review of the published methods for auditing the various conceptual aspects of the UMLS. Categorizing the auditing techniques according to the various aspects will enable the curators of the UMLS as well as researchers comprehensive easy access to this wealth of knowledge (eg, for auditing lateral relationships in the UMLS). We also reviewed ontology enrichment and alignment techniques due to their critical use of and impact on the UMLS.

Indexed as

Quality ControlUnified Medical Language SystemComputer HeuristicsSemantic Webauditingquality assurancereviewunified medical language system

Identifiers

PMID32766692
PMCPMC7566540

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.