Evidence map›Paper›PMID 32765977›Full record

ArticleApplications in plant sciences2020

Recognition of Latin scientific names using artificial neural networks.

Damon P Little

Abstract read
In one paragraph

Article in Applications in plant sciences, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author.

Damon P LittleLewis B. and Dorothy Cullman Program for Molecular Systematics New York Botanical Garden Bronx New York 10458-5126 USA.ORCID https://orcid.org/0000-0001-9635-6164

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

premiseThe automated recognition of Latin scientific names within vernacular text has many applications, including text mining, search indexing, and automated specimen-label processing. Most published solutions are computationally inefficient, incapable of running within a web browser, and focus on texts in English, thus omitting a substantial portion of biodiversity literature. METHODS AND

resultsAn open-source browser-executable solution, Quaesitor, is presented here. It uses pattern matching (regular expressions) in combination with an ensembled classifier composed of an inclusion dictionary search (Bloom filter), a trio of complementary neural networks that differ in their approach to encoding text, and word length to automatically identify Latin scientific names in the 16 most common languages for biodiversity articles.

conclusionsIn combination, the classifiers can recognize Latin scientific names in isolation or embedded within the languages used for >96% of biodiversity literature titles. For three different data sets, they resulted in a 0.80-0.97 recall and a 0.69-0.84 precision at a rate of 8.6 ms/word.

Indexed as

convolutional neural networks (CNN)named entity recognition (NER)taxonomic name recognition (TNR)

Identifiers

PMID32765977
PMCPMC7394707

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.