Evidence map›Paper›PMID 32764694›Full record

ArticleScientific reports2020

Characterization of a SPM-1 metallo-beta-lactamase-producing Pseudomonas aeruginosa by comparative genomics and phenotypic analysis.

Ana Paula Barbosa do Nascimento, Fernando Medeiros Filho, Heidi Pauer, Luis Caetano Martha Antunes, Hério Ênio de Sousa Paz, Hermes Senger, Rodolpho Mattos Albano, Marcelo Trindade Dos Santos, Ana Paula D'Alincourt Carvalho-Assef, Fabrício Alves Barbosa da Silva

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Molecular Epidemiology ofAntibiotics (Basel, Switzerland) · 2024
    Review
  3. Article
  4. Article
  5. Whole-Genome Sequencing Reveals Diversity of Carbapenem-ResistantAntimicrobial agents and chemotherapy · 2022
    Article
  6. Prediction of Potential Drug Targets and Vaccine Candidates Against Antibiotic-ResistantInternational journal of peptide research and therapeutics · 2022
    Article
  7. Article
  8. Genetic Diversity of Multidrug-ResistantFrontiers in microbiology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Ana Paula Barbosa do NascimentoPrograma de Computação Científica, Fundação Oswaldo Cruz, Rio de Janeiro, 21040-360, Brazil. ana.pbn@gmail.com.
Fernando Medeiros FilhoPrograma de Computação Científica, Fundação Oswaldo Cruz, Rio de Janeiro, 21040-360, Brazil.
Heidi PauerCentro de Desenvolvimento Tecnológico em Saúde, Fundação Oswaldo Cruz, Rio de Janeiro, 21040-361, Brazil.
Luis Caetano Martha AntunesCentro de Desenvolvimento Tecnológico em Saúde, Fundação Oswaldo Cruz, Rio de Janeiro, 21040-361, Brazil.
Hério Ênio de Sousa PazDepartamento de Computação, Universidade Federal de São Carlos, São Carlos, 13565-905, Brazil.
Hermes SengerDepartamento de Computação, Universidade Federal de São Carlos, São Carlos, 13565-905, Brazil.
Rodolpho Mattos AlbanoDepartamento de Bioquímica, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, 21941-909, Brazil.
Marcelo Trindade Dos SantosLaboratório Nacional de Computação Científica, Petrópolis, 25651-075, Brazil.
Ana Paula D'Alincourt Carvalho-AssefLaboratório de Pesquisa em Infecção Hospitalar, Fundação Oswaldo Cruz, Rio de Janeiro, 21040-360, Brazil.
Fabrício Alves Barbosa da SilvaPrograma de Computação Científica, Fundação Oswaldo Cruz, Rio de Janeiro, 21040-360, Brazil. fabricio.silva@fiocruz.br.
Fundação Oswaldo Cruz · BRUniversidade Federal de São Carlos · BREscola Nacional de Saúde Pública · BRLaboratório Nacional de Computação Científica · BRUniversidade do Estado do Rio de Janeiro · BR

Funding

Lacrimal Gland Repair Using Progenitor CellsR01EY026202 · NEI · SCRIPPS RESEARCH INSTITUTE, THE · PI MAKARENKOVA, HELEN P. · 2016 to 2025
$5.2M
6 · The paper itself

Abstract

Pseudomonas aeruginosa is one of the most common pathogens related to healthcare-associated infections. The Brazilian isolate, named CCBH4851, is a multidrug-resistant clone belonging to the sequence type 277. The antimicrobial resistance mechanisms of the CCBH4851 strain are associated with the presence of the bla[Formula: see text] gene, encoding a metallo-beta-lactamase, in combination with other exogenously acquired genes. Whole-genome sequencing studies focusing on emerging pathogens are essential to identify key features of their physiology that may lead to the identification of new targets for therapy. Using both Illumina and PacBio sequencing data, we obtained a single contig representing the CCBH4851 genome with annotated features that were consistent with data reported for the species. However, comparative analysis with other Pseudomonas aeruginosa strains revealed genomic differences regarding virulence factors and regulatory proteins. In addition, we performed phenotypic assays that revealed CCBH4851 is impaired in bacterial motilities and biofilm formation. On the other hand, CCBH4851 genome contained acquired genomic islands that carry transcriptional factors, virulence and antimicrobial resistance-related genes. Presence of single nucleotide polymorphisms in the core genome, mainly those located in resistance-associated genes, suggests that these mutations may also influence the multidrug-resistant behavior of CCBH4851. Overall, characterization of Pseudomonas aeruginosa CCBH4851 complete genome revealed the presence of features that strongly relates to the virulence and antibiotic resistance profile of this important infectious agent.

Indexed as

GenomicsPhenotypeAnti-Bacterial Agentsbeta-LactamasesDrug Resistance, BacterialGenome, BacterialGenomic IslandsPolymorphism, Single NucleotidePseudomonas aeruginosaAnti-Bacterial Agentsbeta-Lactamases

Identifiers

PMID32764694
PMCPMC7413544
OpenAlexW3047015969

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.