Evidence map›Paper›PMID 32764457›Full record

ArticleBiology2020

Expanding the Limits of Computer-Assisted Sperm Analysis through the Development of Open Software.

Jesús Yániz, Carlos Alquézar-Baeta, Jorge Yagüe-Martínez, Jesús Alastruey-Benedé, Inmaculada Palacín, Sergii Boryshpolets, Vitaliy Kholodnyy, Hermes Gadêlha, Rosaura Pérez-Pe

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 3 countries.

Jesús YánizBIOFITER Research Group, Higher Polytechnic School of Huesca, Institute of Environmental Sciences of Aragón (IUCA), University of Zaragoza, Ctra. Cuarte s/n, 22071 Huesca, Spain.ORCID 0000-0001-5316-1703
Carlos Alquézar-BaetaDepartment of Mathematics, Institute of Mathematics and Applications (IUMA), University of Zaragoza, Pedro Cerbuna 12, 50009 Zaragoza, Spain.ORCID 0000-0003-0389-2422
Jorge Yagüe-MartínezDepartment of Computer Science and Systems Engineering (DIIS), Aragón Institute for Engineering Research (I3A), Universidad de Zaragoza, María de Luna 3, 50018 Zaragoza, Spain.
Jesús Alastruey-BenedéDepartment of Computer Science and Systems Engineering (DIIS), Aragón Institute for Engineering Research (I3A), Universidad de Zaragoza, María de Luna 3, 50018 Zaragoza, Spain.
Inmaculada PalacínBIOFITER Research Group, Higher Polytechnic School of Huesca, Institute of Environmental Sciences of Aragón (IUCA), University of Zaragoza, Ctra. Cuarte s/n, 22071 Huesca, Spain.
Sergii BoryshpoletsLaboratory of Reproductive Physiology, Faculty of Fisheries and Protection of Waters, South Bohemian Research Center of Aquaculture and Biodiversity of Hydrocenoses, Research Institute of Fish Culture and Hydrobiology, University of South Bohemia in České Budějovice, Zátiší 728/II, 389 25 Vodňany, Czech Republic.ORCID 0000-0002-7346-8734
Vitaliy KholodnyyLaboratory of Reproductive Physiology, Faculty of Fisheries and Protection of Waters, South Bohemian Research Center of Aquaculture and Biodiversity of Hydrocenoses, Research Institute of Fish Culture and Hydrobiology, University of South Bohemia in České Budějovice, Zátiší 728/II, 389 25 Vodňany, Czech Republic.
Hermes GadêlhaLaboratory of Reproductive Physiology, Faculty of Fisheries and Protection of Waters, South Bohemian Research Center of Aquaculture and Biodiversity of Hydrocenoses, Research Institute of Fish Culture and Hydrobiology, University of South Bohemia in České Budějovice, Zátiší 728/II, 389 25 Vodňany, Czech Republic.ORCID 0000-0001-8053-9249
Rosaura Pérez-PeBIOFITER Research Group, Department of Biochemistry and Molecular and Cell Biology, Faculty of Veterinary Sciences, Institute of Environmental Sciences of Aragón (IUCA), University of Zaragoza, Miguel Servet 177, 50013 Zaragoza, Spain.ORCID 0000-0002-2312-6402
Universidad de Zaragoza · ESUniversity of South Bohemia in České Budějovice · CZ

Funding

Aragón Government and European Social Fund (ESF) A07_17R and T58_20RCzech Science Foundation (GACR) 18-12465YSpanish Government BES-2017-079979Spanish MINECO/AEI/ERDF (EU) AGL-2017-83799-R, AGL-2017- 85030-R, PID2019-105660RB-C21
6 · The paper itself

Abstract

Computer assisted sperm analysis (CASA) systems can reduce errors occurring in manual analysis. However, commercial CASA systems are frequently not applicable at the forefront of challenging research endeavors. The development of open source software may offer important solutions for researchers working in related areas. Here, we present an example of this, with the development of three new modules for the OpenCASA software (hosted at Github). The first is the

Indexed as

computer-aided sperm analysisopen-source softwaresperm chemotaxissperm concentrationsperm functionsperm quality

Identifiers

PMID32764457
PMCPMC7464510
OpenAlexW3047087452

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.