Evidence map›Paper›PMID 32763951›Full record

ArticleG3 (Bethesda, Md.)2020

A Comprehensive, Flexible Collection of SARS-CoV-2 Coding Regions.

Dae-Kyum Kim, Jennifer J Knapp, Da Kuang, Aditya Chawla, Patricia Cassonnet, Hunsang Lee, Dayag Sheykhkarimli, Payman Samavarchi-Tehrani, Hala Abdouni, Ashyad Rayhan and 10 more

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
1.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
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  5. Atomic Structure and Phospholipid Binding Properties of thebioRxiv : the preprint server for biology · 2025
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  18. ACS omega · 2023
    Article
  19. Article
  20. Enhanced inhibition of MHC-I expression by SARS-CoV-2 Omicron subvariants.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 8 institutions in 2 countries.

Dae-Kyum KimDonnelly Centre, University of Toronto, Toronto, Ontario, Canada.
Jennifer J KnappDonnelly Centre, University of Toronto, Toronto, Ontario, Canada.
Da KuangDonnelly Centre, University of Toronto, Toronto, Ontario, Canada.ORCID 0000-0003-3554-0464
Aditya ChawlaDonnelly Centre, University of Toronto, Toronto, Ontario, Canada.
Patricia CassonnetUnité de Génétique Moléculaire des Virus à ARN, Département Virologie, Institut Pasteur, Paris, France.
Hunsang LeeDonnelly Centre, University of Toronto, Toronto, Ontario, Canada.
Dayag SheykhkarimliDonnelly Centre, University of Toronto, Toronto, Ontario, Canada.
Payman Samavarchi-TehraniLunenfeld-Tanenbaum Research Institute, Sinai Health System, Toronto, Ontario, Canada.
Hala AbdouniLunenfeld-Tanenbaum Research Institute, Sinai Health System, Toronto, Ontario, Canada.
Ashyad RayhanDonnelly Centre, University of Toronto, Toronto, Ontario, Canada.
Roujia LiDonnelly Centre, University of Toronto, Toronto, Ontario, Canada.
Oxana PogoutseDonnelly Centre, University of Toronto, Toronto, Ontario, Canada.
Étienne CoyaudUniv. Lille, Inserm, CHU Lille, U1192 - Protéomique Réponse Inflammatoire Spectrométrie de Masse - PRISM, F-59000 Lille, France.
Sylvie van der WerfUnité de Génétique Moléculaire des Virus à ARN, Département Virologie, Institut Pasteur, Paris, France.
Caroline DemeretUnité de Génétique Moléculaire des Virus à ARN, Département Virologie, Institut Pasteur, Paris, France.
Anne-Claude GingrasDepartment of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada.
Mikko TaipaleDonnelly Centre, University of Toronto, Toronto, Ontario, Canada.
Brian RaughtDepartment of Medical Biophysics, Princess Margaret Cancer Centre, University of Toronto, Toronto, Ontario, Canada.
Yves JacobUnité de Génétique Moléculaire des Virus à ARN, Département Virologie, Institut Pasteur, Paris, France yves.jacob@pasteur.fr fritz.roth@utoronto.ca.
Frederick P RothDonnelly Centre, University of Toronto, Toronto, Ontario, Canada yves.jacob@pasteur.fr fritz.roth@utoronto.ca.
Sinai Health System · CAUniversity of Toronto · CACentre de Gestion Scientifique · FRLunenfeld-Tanenbaum Research Institute · CACanadian Institute for Advanced Research · CAInserm · FRInstitut Pasteur · FRPrincess Margaret Cancer Centre · CA

Funding

Canadian Institutes for Health Research
6 · The paper itself

Abstract

The world is facing a global pandemic of COVID-19 caused by the SARS-CoV-2 coronavirus. Here we describe a collection of codon-optimized coding sequences for SARS-CoV-2 cloned into Gateway-compatible entry vectors, which enable rapid transfer into a variety of expression and tagging vectors. The collection is freely available. We hope that widespread availability of this SARS-CoV-2 resource will enable many subsequent molecular studies to better understand the viral life cycle and how to block it.

Indexed as

BetacoronavirusCloning, MolecularCoronavirus InfectionsCOVID-19Escherichia coliHumansOpen Reading FramesPandemicsPlasmidsPneumonia, ViralPotyvirusSARS-CoV-2coding sequence collectionGateway-compatibleSARS-CoV-2TEV (tobacco etch virus) sequence

Identifiers

PMID32763951
PMCPMC7467003
OpenAlexW3047277914

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.