Evidence map›Paper›PMID 32763908›Full record

ArticleGenetics2020

Genetic Architecture Modulates Diet-Induced Hepatic mRNA and miRNA Expression Profiles in Diversity Outbred Mice.

Excel Que, Kristen L James, Alisha R Coffey, Tangi L Smallwood, Jody Albright, M Nazmul Huda, Daniel Pomp, Praveen Sethupathy, Brian J Bennett

RetractedOpen access · hybridAbstract readRetracted Publication
In one paragraph

Article in Genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Human pancreatic islet microRNAs implicated in diabetes and related traits by large-scale genetic analysis.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Excel Que *Western Human Nutrition Research Center, Agricultural Research Service, US Department of Agriculture, Davis, California 95616.
Kristen L James *Department of Nutrition, University of California, Davis, California.ORCID 0000-0002-3704-3560
Alisha R CoffeyCurriculum in Genetics and Molecular Biology, University of North Carolina at Chapel Hill, North Carolina.
Tangi L SmallwoodCurriculum in Genetics and Molecular Biology, University of North Carolina at Chapel Hill, North Carolina.
Jody AlbrightNutrition Research Institute, University of North Carolina at Chapel Hill, Kannapolis, North Carolina.
M Nazmul HudaWestern Human Nutrition Research Center, Agricultural Research Service, US Department of Agriculture, Davis, California 95616.ORCID 0000-0003-2775-4470
Daniel PompDepartment of Genetics, University of North Carolina at Chapel Hill, North Carolina.ORCID 0000-0001-6609-9195
Praveen SethupathyDepartment of Biomedical Sciences, College of Veterinary Medicine, Cornell University, Ithaca, New York praveens@cornell.edu brian.bennett@usda.gov.ORCID 0000-0002-7983-239X
Brian J BennettWestern Human Nutrition Research Center, Agricultural Research Service, US Department of Agriculture, Davis, California 95616 praveens@cornell.edu brian.bennett@usda.gov.ORCID 0000-0002-0766-3195
University of North Carolina at Chapel Hill · USAgricultural Research Service · USCornell University · USUniversity of California, Davis · US

Funding

UNIV OF NORTH CAROLINA CLINICAL NUTRITION RESEARCH UNITP30DK056350 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Ian Michael Carroll · 1999 to 2026
$31.6M
Molecular and Biological Functions of miR-29 in Lipid HomeostasisR01DK105965 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SETHUPATHY, PRAVEEN · 2016 to 2019
$1.4M
Systems Genetic Studies of TMAO regulation and AtherosclerosisR01HL128572 · NHLBI · U.S. AGRICULTURAL RESEARCH SERVICE · PI BENNETT, BRIAN JOSEPH · 2015 to 2019
$1.4M
NHLBI NIH HHS R01 HL128572NIDDK NIH HHS P30 DK056350NIDDK NIH HHS R01 DK105965
6 · The paper itself

Abstract

Genetic approaches in model organisms have consistently demonstrated that molecular traits such as gene expression are under genetic regulation, similar to clinical traits. The resulting expression quantitative trait loci (eQTL) have revolutionized our understanding of genetic regulation and identified numerous candidate genes for clinically relevant traits. More recently, these analyses have been extended to other molecular traits such as protein abundance, metabolite levels, and miRNA expression. Here, we performed global hepatic eQTL and microRNA expression quantitative trait loci (mirQTL) analysis in a population of Diversity Outbred mice fed two different diets. We identified several key features of eQTL and mirQTL, namely differences in the mode of genetic regulation (

Indexed as

DietGenetic VariationHybridization, GeneticAnimalsBiological Variation, PopulationLiverMiceMicroRNAsPhenotypeQuantitative Trait LociRNA, MessengerTranscriptomeMicroRNAsRNA, MessengereQTLmirQTLMultiparental modelsQuantitative trait loci

Identifiers

PMID32763908
PMCPMC7463293
OpenAlexW3047218830

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.